BAC Information

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BAC

Clone NameMSMg01-134P12
Chromosome7 (Build37)
Map Location 70,313,635 - 70,313,971
singlet/doubletsinglet
Overlap geneChrna7
Upstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
Downstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134P12.T7 (MSMg01no134_p12.b1)MSMg01-134P12.TJ (MSMg01no134_p12.g1)
ACCAG341551AG341552
length1,3151,177
length of high quality
(start - end)
80 (29 - 108)370 (89 - 458)
definitionCHROMAT_FILE: MSMg01no134_p12.b1 PHD_FILE: MSMg01no134_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:56 2005CHROMAT_FILE: MSMg01no134_p12.g1 PHD_FILE: MSMg01no134_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGGATATGGGGTCAAGACTACTAAGGGAGAGGATCCGCGGAATTTA
GGGCCAAGAAGCGGGATTGGGTGGGTAGGGGAGCAGGGTGGGGCAAGGGG
GGGATTTTAAATTTTTTTCCCCCCNTTGTTGTGTGTTGTTTTGTTGATTG
ATTGAATATGAAAGGGGGAGAAGGAATTTTTTAAGAAGGTTTTTTTTTGG
NAGNANAAAAAGAAGATAATATTAGAATAGTTTTGTTAAGTTGTATTTTT
TTTGGTTATATGATTTATGTATGTTTGTTTATATATGTTAATTATTAGAA
TTGAATGTAATTGAGTTATATGATTTTTTATGTGTTGTAAGATGTGTTGT
TTAGTTTTGAAAATATATTAAATAATATTATTTTAATGTATATTTTTTTT
TTTTAAGCAAAAGATCAGAAAATGTTTTTTGGGGATGTGAACAACTTTTT
TTTTTTTTCCCCCCCAAAAAAAACACCCTTTTTAAAAAAAAAAAAGGGGG
GGTTTNTTTTTTTTTTNTTTATTTTTATATTTAATATTTTTATTTTTTTA
ATTTTTTTTTTTATTTTTTTTTATTTATGTTTATAAATTTTTTTTTTTTA
TTTTTTTTGTTTTTTTATTTTTATATGTTTATATGTTAGTATTATTTTTT
TTTTATTTTTTTATTTATTTTTTATTTATTTATTTGATTTTATTTTATTT
ATATTTTTATATATATTAATATTATTTTTTTTTTTTTTTTTTTATATTTT
TTTTTATTATATTTTTTATTTATTTTAATTTTTTAATTTGTTTTTAATTT
TTTATAATGATTTTATTTTTTTATATTTTATTTTTTATATTTGTTTTATT
ATATTAATTTATATTTATTTTTTTTTTATATTATATTATTTTTTAATTTA
GATTTTTTTTTTTTGTTTTTTTTATTTTTTATTATATTAATTATTTTATT
ATTTATTTTTTATTAATTTTATTTTATATTTTTATTATTTTTTTTGTAAT
ATATTTATTTTTTTAATATGAGTTAATTTTTTTTTTTGTTTTTTTTAATT
TCTTTGTTATTTAATTATTTTTTTATATAATATTTTATTTTATATTTTAA
TAATATATGATTTAGTATTTTTATTGTTGTTTTATTTATATATGGTATTA
TATTTATTTTATTTTTTTTTATTTAAATAGTTTATTTTATTTTTATTTTA
TAAGTTAATTTATTTATTATTAGTTATATATATTTATTATTAATAATAAT
TATTTATTATTTTAATATTTTATTTGATATTATATATATATAATAATATA
TTGTAATTATATAAT
NGGAATATTNNNNNGGAAGACGTGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACAGCCAGAAG
ATGGAGCCAAGGTTTGTATATATACCTCTATGCTACCATCCTTCCACAAC
CAGCACTGGGCATCTCTGCACTGTTCACAACAAAGGCAGACCTGTAACAA
GTGCAGAGCAAAGATCTGTGAGTGAGTCCATCCTTGCACCAGTACCAGGG
GCCATGAATACAGATATGGACAGCATCGGTCTGAGGTGGGCTTTTCCTAA
AAGCTTATTGTCACATGATCCATCAAATATCTGACACCTGCGTAGAAGGA
ATCCTAACGGACAAGAAAATAAATGGGAGAAGAATGAAGTGTGTTTGTAG
GAGTTAGTAGCAGAATTTACCCATTATTCACCGAGCAGGCTGAGGTTGAA
CGCAGTTTTTTTCCTCCCCCCCACAGATGCTTTAACTTCAGTACAAAAAA
AAGGCCTCGTGGTTAAACTTTGTGTTGAGAGCCAGTGTCACTAAGCTGCT
GGTTGGGCCCTTGTTCCCTAGCCTAGACAGGTCTTGAGCTAACAAGATCC
TGCTAACTCTGTTTCCTGGGCATTTGGGATCACTGGGTACACAATGACAC
TAGTATTAAATTTATCTTTAAATGACACATAGAAATCACACATACTTATG
GGGTGCTCATGATGTTTCATTACATTATGTATGTATATATCATATAATGT
TTAAGTCATTACATATACCTATCATCTCAAACTTTTATGATTTTTTTCCT
CAGTGGAAATATGCAAATGCTTTACTTGTAGCTTTCTGCAATGCAGAGTG
ACCTACAGAAAGCCCCCCCAATGTAACAAGTCCCATCCAAACCTTCTTAC
TCCACCTTAATGTCCACCGCCCCAGCCCTCTTCCCATGCCTCTTTTCCCC
TTAAGCAAGACTTTAAAAGCAGTCAACCTCCCCCTGGGTTTTAAAATTTT
ATGGCTTAAAAAAGTTTCTCCAAAAATAAATACCATTTTTCCATTTTAAA
AAACCCCACCTAACCTTTTTACCCGCGTCACCTTTTATCTTATAATGTGT
CCGCCAACAATTGCCTTGTTCTGCCTTTTACCTCTATACAAAACAATATT
GTTTTTACTCCTCCCAGCCTCATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_p12.g1 MSMg01no134_p12.g1 CHROMAT_FILE:
MSMg01no134_p12.g1 PHD_FILE: MSMg01no134_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:56 2005
         (370 letters)



>mm_chr7_70313435_70314204
          Length = 770

 Score =  598 bits (309), Expect = e-175
 Identities = 330/337 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagccagaagatggagccaaggtttgtatatatacctctatgctaccatccttccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gacagccagaagatggagccaaggtttgtatatatacctctatgctatcatccttccaca 260

                                                                       
Query: 61  accagcactgggcatctctgcactgttcacaacaaaggcagacctgtaacaagtgcagag 120
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 261 accagcactgggcatctctgcactgttcacaacaaagacagacatgtaacaagtggagag 320

                                                                       
Query: 121 caaagatctgtgagtgagtccatccttgcaccagtaccaggggccatgaatacagatatg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 caaagatctgtgagtgagtccatccttgcaccagtaccagaggccatgaatacagatatg 380

                                                                       
Query: 181 gacagcatcggtctgaggtgggcttttcctaaaagcttattgtcacatgatccatcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagcatcggtctgaggtgggcttttcctaaaagcttattgtcacatgatccatcaaat 440

                                                                       
Query: 241 atctgacacctgcgtagaaggaatcctaacggacaagaaaataaatgggagaagaatgaa 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 atctgacacctgcgtagaaggaatcctaacagacaagaaaataaatgggagaagaatgaa 500

                                                
Query: 301 gtgtgtttgtaggagttagtagcagaatttacccatt 337
           ||||||||||||||||||| |||||||||||||||||
Sbjct: 501 gtgtgtttgtaggagttaggagcagaatttacccatt 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)