BAC Information

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BAC

Clone NameMSMg01-135E14
Chromosome7 (Build37)
Map Location 12,726,151 - 12,726,569
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433
Downstream geneV1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135E14.T7 (MSMg01no135_e14.b1)MSMg01-135E14.TJ (MSMg01no135_e14.g1)
ACCAG341785AG341786
length750712
length of high quality
(start - end)		243 (64 - 306)419 (77 - 495)
definitionCHROMAT_FILE: MSMg01no135_e14.b1 PHD_FILE: MSMg01no135_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:23 2005CHROMAT_FILE: MSMg01no135_e14.g1 PHD_FILE: MSMg01no135_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGGGCGCTAAAGACTCCTAAGTCCGAAGTCGCGCGGAATCATCC
CATTATCGATAAAAATCAGACCTATTGTGGATGCAAGAAGTGCTTGCAGA
AAGGAGCCTGACACAGCTTTCTCCTGAGAGGTCCTGCCAGAGCTTCACAA
ATACAGAGGCAGATGTTCACAGCCAATTATTGGACTGAGCACAGGATTCC
CAATGGAGGAGGTAGAGAAAGGACTGAAGTAGCTGAGGGGGCTTGCAATC
CCATAGGAAGAGCAGCAATATCAACCAACCAGAGCTCCCAGAGCACCCAG
GGACTATTTCTTCCTTCCATGGAGTACATGGCTCCATCTGGGTATGTCCC
ATAGTATGGCCTTGTCAGGTATCAATGTCAGGAGAGGCCCTTGTTTCTAT
GAAGGCTCAAAAGATATCCCAGTGTAGTGCAATCGAACGCGGTGAGGCTG
GGATGGGTGGTTGTCTGTATCCTTACCATCCACAATTTTTGCCCAAATAA
AACCCTTATTAATTTTACTCTCTTCTAACCCGTATCTTAACTATAATTAT
TTTTACTTATGCAATATTAATACACCTAACGAAAATAATAGTATCTTCTC
TCTTTCCATCTAACCTTCCACTCTCCTTACAATCACTTGCCCTCTTCACC
CATATCTCTATCCATCACTCGAAACCATTCATTTATACTCCCTCTTTTTT
TATTCCATTACCCTTCTACGCTCCCTAAATTCTTATTTTCCCCCTCCCCC


CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCCACCTGCCTCTGCCTCT
CAAGTGCTGGGATTAAAGGTGTGTGCCACCAATGCCTAACACTATGGGCT
TTTTATGTCACAGGTATGGGAAGGAACACAGGACTCCCCTCCATGTGGTT
GGACTTTTTATCAGGAGTATGCTGCATGTCATTGGTGCCTCTGGCCCTCA
AAAGCATGCATGCCTAGCATGCACACACAACCCACTTTGGCTGCTTCCTT
GAGTATCCCAACGACTTATTTTTCAGTGTGCCCCAAATCACTAAAAGACA
GAATGCAGAGATTGGACCTAGGCCCTATACATATTTGGAGCAGATGTTCA
GGTTGGTCTACATGTGGGTCCCCTAACAATTGGAGCACAGATGTCTATGT
TGCCTGCCATTTGATACACTTCTCATAACTGAACTGCCTGATTGAGCATC
AGTGGAAAGAAACATGCTTAGTCTTGCTGGGTGTAATTTCCTAGGGTGGG
ATGATACTCAAGGGGGGTGCCCCCTTTCTCTGAGGAAAACAAAAGGGGAT
AATTGAGGATGAGATTTATAAGGGGAAAATGTGGAAAGTTATTTTTCTTT
CCCTCCCTTTTTTCCTTTTTTTATTTTTACTTCACTATTTATTATCCTTC
TTTCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_e14.g1 MSMg01no135_e14.g1 CHROMAT_FILE:
MSMg01no135_e14.g1 PHD_FILE: MSMg01no135_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:23 2005
         (419 letters)



>mm_chr7_12726005_12726823
          Length = 819

 Score =  764 bits (395), Expect = 0.0
 Identities = 413/419 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaatccacctgcctctgcctctcaagtgctgggattaaaggtgtgtgccaccaatgcc 60
           ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct: 565 agaaatccacctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccaatgtc 506

                                                                       
Query: 61  taacactatgggctttttatgtcacaggtatgggaaggaacacaggactcccctccatgt 120
           || || |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 tagcattatgggctttttatgtcacaggtatgggaaggaacacaggactcccttccatgt 446

                                                                       
Query: 121 ggttggactttttatcaggagtatgctgcatgtcattggtgcctctggccctcaaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttggactttttatcaggagtatgctgcatgtcattggtgcctctggccctcaaaagca 386

                                                                       
Query: 181 tgcatgcctagcatgcacacacaacccactttggctgcttccttgagtatcccaacgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcatgcctagcatgcacacacaacccactttggctgcttccttgagtatcccaacgact 326

                                                                       
Query: 241 tatttttcagtgtgccccaaatcactaaaagacagaatgcagagattggacctaggccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttttcagtgtgccccaaatcactaaaagacagaatgcagagattggacctaggccct 266

                                                                       
Query: 301 atacatatttggagcagatgttcaggttggtctacatgtgggtcccctaacaattggagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacatatttggagcagatgttcaggttggtctacatgtgggtcccctaacaattggagc 206

                                                                      
Query: 361 acagatgtctatgttgcctgccatttgatacacttctcataactgaactgcctgattga 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acagatgtctatgttgcctgccatttgatacacttctcataactgaactgcctgattga 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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