BAC Information

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BAC

Clone NameMSMg01-135G09
Chromosome7 (Build37)
Map Location 81,425,070 - 81,425,314
singlet/doubletsinglet
Overlap geneSlco3a1
Upstream gene4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979
Downstream geneEG665308, EG665641, 0610006L08Rik, Sv2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135G09.T7 (MSMg01no135_g09.b1)MSMg01-135G09.TJ (MSMg01no135_g09.g1)
ACCAG341867AG341868
length776720
length of high quality
(start - end)
60 (196 - 255)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no135_g09.b1 PHD_FILE: MSMg01no135_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:31 2005CHROMAT_FILE: MSMg01no135_g09.g1 PHD_FILE: MSMg01no135_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATTXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCAAAAAGGATCCGCG
GAATTCTTTGTGTCCCTCAAATTCTTCATAGACCAACATCCTTCAGATTT
GCCCACAGAAGAGATATAGAGACCTGCTGTTAGTGAGAAACATTTCATTC
AGGTCTGCCCCTTTGTGCAGGAAAGTGTTTGTGCATGGGTGTAGGGCTAC
AAGGCCATGTGTATGCAGTTGTATTTATCTCACGCTCAGCTGGTGTTGCC
TTGCCAACTGGCTCATGCTCTAGTATCTGTGAACTGAGAGTGCCTGAAAG
GGCTTTGAGTGTACGCTGTTTTCTTTTCCCTTAGACGCCCGTAAGCTCGA
TCAAGGTTTGAACAATCCACCCATCATAGTCTCTTTCTTTAATCATGTCA
CTTATCTTTGTCTGGTCCCCCGCGCTATCCACTTCCCCAGTTCACTTAAG
TTACTTCTTTTCTCTTCCACTTCATTATTTACGATATATATTGTTATTGC
CTAACACAATATAATTAACCACATAACAACTTCCTGTTGTTAAATTTTCC
CTTATTTATATTTGGCGTATTATGTCATCATAAACCAATTCAATAAATAC
TTTTTTTCCACTATTCTATTCACTTGTATCTGTCATTACTTATTTCTTTT
TACTAACGAGTACTTTTTCAATTAATATATTGTTTATCTTTGTTAAACCT
TGTTTTTTTTGTCATTATATTTTACTTTTTTCTTGCTTTATTTCTTTTTA
AACCTAATTATTTTATTTTTTTTTAG
CATTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTAAACCAGATTTTATTTCACTATTAC
CCTCTCTTGGAAAACATGGTGCCGTTTAGGTATTCAACCTGGATTCTTAA
CTTAAAGATTTTAAAGTTAATTGTATTGAAGGAAACTCAGAGGACCAGTG
AAAACCCTACTGGTTGGTGCTGTCCCTGATTTCTGGCCAGATAGCTGGCT
GTCCCATGCATCAAAACAATCAGGTAAGAACAGCAAAAGTCAGGAAATAA
ATATCTTCCATCTGCTATAGTGAGAAGCTGCACACTTGGGTCTCCTTGCT
CACCATAACCAAACCAAACTCACAGTAAAAAGATGGCAGGCTCCCAATAA
ACAGCAAGGCCCCCTTGTTCTGTCAGTGTCCTTTTTTCCTTTCCCTTTTT
TTTTTTTTTTTGACTGTGAGGTCAGACCAGTTGATTTCCTCATACCGATA
CCTACCATTTCGCAATAATGAACACTGATTTCAAGACTCTCATGGAGATT
TTATGAAAATTCCCATGGTCGACTAGCCCTAATTGATATTTGAAACCTCT
CTTCTCCATAGATCAGAACTAGTATATTAAAAGAAAGCCCGATGCCTTTA
TTTTTGGCTGACCCACCACCATGTTTCCTTAAAATTAACTTCATGTGTTC
CAAATTCAATCTTTACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_g09.g1 MSMg01no135_g09.g1 CHROMAT_FILE:
MSMg01no135_g09.g1 PHD_FILE: MSMg01no135_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:31 2005
         (246 letters)



>mm_chr7_81424870_81425515
          Length = 646

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaaaccagattttatttcactattaccctctcttggaaaacatggtgccgtttaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaaccagattttatttcactattaccctctcttggaaaacatggtgccgtttaggta 260

                                                                       
Query: 61  ttcaacctggattcttaacttaaagattttaaagttaattgtattgaaggaaactcagag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 261 ttcaacctggattcttaacttaaagattttaaagttaattgtattgaaggaaacccaggg 320

                                                                       
Query: 121 gaccagtgaaaaccctactggttggtgctgtccctgatttctggccagatagctggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccagtgaaaaccctactggttggtgctgtccctgatttctggccagatagctggctgt 380

                                                                       
Query: 181 cccatgcatcaaaacaatcaggtaagaacagcaaaagtcaggaaataaatatcttccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatgcatcaaaacaatcaggtaagaacagcaaaagtcaggaaataaatatcttccatc 440

                
Query: 241 tgcta 245
           |||||
Sbjct: 441 tgcta 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)