BAC Information

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BAC

Clone NameMSMg01-135I11
Chromosome7 (Build37)
Map Location 82,871,694 - 82,872,275
singlet/doubletsinglet
Overlap geneAkap13
Upstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135I11.T7 (MSMg01no135_i11.b1)MSMg01-135I11.TJ (MSMg01no135_i11.g1)
ACCAG341964AG341965
length712885
length of high quality
(start - end)
654 (47 - 700)46 (78 - 123)
definitionCHROMAT_FILE: MSMg01no135_i11.b1 PHD_FILE: MSMg01no135_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:41 2005CHROMAT_FILE: MSMg01no135_i11.g1 PHD_FILE: MSMg01no135_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGTCTCGTCATCAGAAGATGAGCTCAGGTCAGGTCAGCAGCA
GAGAGGTGAGATGCCAGCTTAGCTCAGGGGAAGCAGAGCGGTGAGATGCC
AGCTTAGCTCAGGGGAAGCAGAGCGGTGAGATGCCAGCGCAGGGGAAGAC
GGCTGTTTGCTCAGCCTCAAGATTTCCATCAGGCACTAAGTTAACCTCCT
GAGCTCAGCTGGTGATCTCTGAGAGACCCTTCCTCTCTCTTCTCATAGAG
TTGATGCAGACAGAGTTACTTCACATCCGCACACTCAAGATCATGAGTGA
CGTGTACAGCCGGGGCATGATGACAGATCTGCTCTTTGAGCAGCAGATGG
TGGAAAAGCTGTTCCCCTGCTTGGATGAGCTGATCAGTATCCACAGCCAG
TTCTTTCAGAGGATCCTGGAGCGGAAGAAGGAGTCTCTTGTGGATAAGAG
TGAAAAGAACTTTCTCATCAAGAGGATAGGGGATGTGCTTGTCAGTCAGG
TGAGCAGCCGGAAGGTCCTGGGTTCTTCTCACGCGGGCGGGTAGAGAGAA
GCTTTGTAACTCTGGATCCCTGCTCGTTTGTCTTTTAGACTTAGCAAATT
GGTTTAATCAAACCCTCGATTTCCTTTTCTGTAAAATAAAGAAAGCAGGG
TTTCTCTGCTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCAAGTTGTGTGTGTGAGAG
AGAGAGAGGGGGGGGGGACAGGCAGGTTTTTNNCCTCCCCTATCTATTTT
TCTTCCCCCTTCTTTTCTCTCCTCTTTCTCTTCTTCTCCCCCCCTCCCCC
CCCCCTCCTTCCCCCTCCTCCTCCTTTCTTCTTTTCTTTTTCCCCTCTCT
TCTTTTTTTTTTTNTCCCCCCCCCCCCTTCTACCNCCNCCCCCCCCCCAC
CCTCCCCCCTCACAAACCCCCGACCTTTTTTTTTCTTTTTTAGTCGCCCC
GCGTCCCCGCCCCCGTCTCAGGTTTTTGTTTTTCCCCCCCCTCTTCTGTT
TGGTGTACTCCCCGCCCCCCCCCGCACATCTCTTATTTGTTGCCTCCCCC
CCCCCCCCCTTCTTTCGCTCCGTTTTGATTTCTTCACCCCCCCCCCCCTC
TCACATTCACCTCTATGGGCGCTACTCATCAGCCCCCTCCGCGGTTCTAC
TCTTCTTCATAGCCCGAACGCACGCACCCCGTTATCCCGCCACCCCTTAT
TCCGCTAAATCGTACGCGCCCTCACCTTTTCCCTCTCCCCCTACCCCCGT
CCATGCATCCACCGTCCCTGACCGTGATCCGCTCACCACCGCCCTCAGTT
TCTCTGCTGTCACGTGCGGTGCGTGGCTCGGTCCCCTCCTCTGGCGCCTC
CTCTTTTGCTTTCGCTCGCTTTCGTACTATATTTGCCGGCGGATTTGTTA
TATTCTTCCTACCCTCCCCCGAGCGGCCAGAAGCAGCGCGCGGAACGGAC
GCGGGACAGTTGAGGAGTGAGGACGGCGAGCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_i11.b1 MSMg01no135_i11.b1 CHROMAT_FILE:
MSMg01no135_i11.b1 PHD_FILE: MSMg01no135_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:41 2005
         (654 letters)



>mm_chr7_82871444_82872492
          Length = 1049

 Score = 1023 bits (529), Expect = 0.0
 Identities = 562/587 (95%), Gaps = 23/587 (3%)
 Strand = Plus / Plus

                                                                       
Query: 86  agcagagcggtgagatgccagcttagctcaggggaagcagagcggtgagatgccagcgca 145
           ||||||| |||||||||||||||     ||||||||||||||||||||||||||||||||
Sbjct: 251 agcagagaggtgagatgccagct-----caggggaagcagagcggtgagatgccagcgca 305

                                                                       
Query: 146 ggggaagacggctgtttgctcagcctcaagatttccatcaggcactaagttaacctcctg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ggggaagacggctgtttgctcagcctcaagatttccatcaggcactaagttaacctcctg 365

                                                                       
Query: 206 agctcagctggtgatctctgagagacccttcctctctcttctcatagagttgatgcagac 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agctcagctggtgatctctgagagacccttcctctctcttctcatagagttgatgcagac 425

                                                                       
Query: 266 agagttacttcacatccgcacactcaagatcatgagtgacgtgtacagccggggcatgat 325
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agagttacatcacatccgcacactcaagatcatgagtgacgtgtacagccggggcatgat 485

                                                                       
Query: 326 gacagatctgctctttgagcagcagatggtggaaaagctgttcccctgcttggatgagct 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gacagatctgctctttgagcagcagatggtggaaaagctgttcccctgcttggatgagct 545

                                                                       
Query: 386 gatcagtatccacagccagttctttcagaggatcctggagcggaagaaggagtctcttgt 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gatcagtatccacagccagttctttcagaggatcctggagcggaagaaggagtctcttgt 605

                                                                       
Query: 446 ggataagagtgaaaagaactttctcatcaagaggataggggatgtgcttgtcagtcaggt 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggataagagtgaaaagaactttctcatcaagaggataggggatgtgcttgtcagtcaggt 665

                                                                       
Query: 506 gagcagccggaaggtcctgggttcttctcacgcgggcgggtagagagaagctttgtaact 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gagcagccggaaggtcctgggttcttctcacgcgggcgggtagagagaagctttgtaact 725

                                                                       
Query: 566 ctggatccctgctcg------------------tttgtcttttagacttagcaaattggt 607
           |||||||||||||||                  |||||||||||||||||||||||||||
Sbjct: 726 ctggatccctgctcggacatctcagctctactgtttgtcttttagacttagcaaattggt 785

                                                          
Query: 608 ttaatcaaaccctcgatttccttttctgtaaaataaagaaagcaggg 654
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttaatcaaaccctcgatttccttttctgtaaaataaagaaagcaggg 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1049
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1039
Effective search space:   669116
Effective search space used:   669116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)