Query= MSMg01no137_b22.b1 MSMg01no137_b22.b1 CHROMAT_FILE:
MSMg01no137_b22.b1 PHD_FILE: MSMg01no137_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:42 2005
(698 letters)
>mm_chr7_6388667_6389764
Length = 1098
Score = 1083 bits (560), Expect = 0.0
Identities = 678/770 (88%), Gaps = 85/770 (11%)
Strand = Plus / Plus
Query: 5 gaattcaactgtcctttactaggaaggtatcagtgggatttgcaagagtacaaaataaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gaattcaactgtcctttactaggaaggtatcagtgggatttgcaagagtacaaaataaag 197
Query: 65 ccacatttattaccaagtattgtttttgagaagttaattgtatattcaaaatatatgtat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ccacatttattaccaagtattgtttttgagaagttaattgtatattcaaaatatatgtat 257
Query: 125 aataatgatattatataattaataataataataatagagtataataatagtgtatataca 184
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 258 aataatgatattatataat------taataataatagagtataataatagtgtatataca 311
Query: 185 gtataataataataaatgtactactttaaagtatgaacatttatcaatttcagcttaaat 244
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gt---ataataataaatgtattactttaaagtatgaacatttatcaatttcagcttaaat 368
Query: 245 atgggacagaaacatagataaaaatcaaataaggaacagattgttgaacattcacagtaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atgggacagaaacatagataaaaatcaaataaggaacagattgttgaacattcacagtaa 428
Query: 305 tttttgagagaaatcaatgtgtttgaaaattaccatcctagatgtaattgttagaagtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttttgagagaaatcaatgtgtttgaaaattaccatcctagatgtaattgttagaagtag 488
Query: 365 ttttcctgtgtcaaaggatcaagatgtttaaaaaaaaggattacactcatttgctgtgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttttcctgtgtcaaaggatcaagatgtttaaaaaaaaggattacactcatttgctgtgtg 548
Query: 425 tgcatgtgtgtgagagccagtgtgcac--------------------------------- 451
|||||||||||||||||| ||||||||
Sbjct: 549 tgcatgtgtgtgagagcccgtgtgcacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 608
Query: 452 -------------gtgtgtgtgtgtgtgccactga-----actg------------tgt- 480
|||||||||||||||||||||| | || |||
Sbjct: 609 tgtgtgtgtgtgtgtgtgtgtgtgtgtgccactgatgaggagtggagggaagggggtgtc 668
Query: 481 ------------gtggagggttaatgacctcaaagcctcaggtggcctgagaagctctgg 528
|| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 attttctacttagtagagagttaatgacctcaaagcctcaggtggcctgagaagctctgg 728
Query: 529 gtaggaatgttgactttatcgttgacacctgtgggctgtcaggttccagaagtttctaat 588
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gtaggaatgttgacttcatcattgacacctgtgggctgtcaggttccagaagtttctaat 788
Query: 589 aagaggatcatggcatcgatcactctcagactgcagggaaatttcaagtgtccatgccac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aagaggatcatggcatcgatcactctcagactgcagggaaatttcaagtgtccatgccac 848
Query: 649 gtgtggagtctccacctcaccgagagaccgcagtccttcagttgttctga 698
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gtgtggagtctccacctcaccgagagaccgcagtccttcagttgttctga 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_b22.g1 MSMg01no137_b22.g1 CHROMAT_FILE:
MSMg01no137_b22.g1 PHD_FILE: MSMg01no137_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:42 2005
(639 letters)
>mm_chr7_6538514_6539552
Length = 1039
Score = 746 bits (386), Expect = 0.0
Identities = 416/434 (95%), Gaps = 13/434 (2%)
Strand = Plus / Minus
Query: 1 atgggcagagatgccccctgtgcctgtgagaaatgcgttgcgaagtcagctcctcccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgggcagagatgccccctgtgcctgtgagaaatgcgttgcgaagtcagctcctcccctg 362
Query: 61 tttcagctgctcatcctcagctgcagaggctgcatttctggcaatgatggcccccatacc 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 361 tttcagctgctcatcctcagctgcagaggctgcatttctggcaataatggcccccaaacc 302
Query: 121 aattagtctcagtcctgtgcccaagcagcccccaactttcttgggttacagcttgggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aattagtctcagtcctgtgcccaagcagcccccaactttcttgggttacagcttgggcct 242
Query: 181 ctactcagctcaatttacttagggtgtgcagctacaccccctttttaaaaatcattttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctactcagctcaatttacttagggtgtgcagctacaccccctttttaaaaatcattttat 182
Query: 241 tcatttacctttcagatgatatcccccttcccagttaccgctccacaaacccccatccta 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 181 tcatttacctttcagatgatatcccccttcccagttacccctccacaaacccccatccta 122
Query: 301 tccctcctctcctccctcccctcctccctcccccttgcctctatgagggtgctcctctag 360
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 tccctcctctcctccct-------------ccccttgcctctatgagggtgctcctctag 75
Query: 361 ccattcacctgcctcactgctttagctgtcccctatgctggagcaccgaacctccacagg 420
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 74 ccattcacctgcctcactgctttagctgtcccctgtgctggggcaccgaacctccacagg 15
Query: 421 accaaggaccaccc 434
||||||||||||||
Sbjct: 14 accaaggaccaccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
