BAC Information

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BAC

Clone NameMSMg01-137G12
Chromosome7 (Build37)
Map Location 132,011,970 - 132,012,213
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137G12.T7 (MSMg01no137_g12.b1)MSMg01-137G12.TJ (MSMg01no137_g12.g1)
ACCAG343344AG343345
length738726
length of high quality
(start - end)
296 (71 - 366)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no137_g12.b1 PHD_FILE: MSMg01no137_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:05 2005CHROMAT_FILE: MSMg01no137_g12.g1 PHD_FILE: MSMg01no137_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXCTAATTCATGAGGATGCGCGGAAT
TCCATTCTTTTCCGAAGCCTGCTAGTATTCCACTGCAGGCATCTATCACA
TTTCCTTAACCTAGCCATATAAGGATGTGAGCGGGTTATGTCAGTTTGGT
TATTACGGATATTGCTGCACTGAGCATAGAAGCACAGACTGCTCCCTGAA
GCTTGATTGCTTTTCTTCATGGTTAAATCCACAGAGGTAGAATTGCTGGG
TCATACACTATCTCCAGGTTTAACACTTTGAGACATGTCCAGGCTCCTTT
CTGTAGACACCATTTTTGTTTTCTTGAGCGAGTACGACGATGGGTCTCCT
ATGGCGTTTCTTATGTATAAAACAAGAAGTTTCACTGTGCAGGCTTGCAG
GAAACAAATGCGATATCTCAGATGCTCTCATTCTGGTTGTGCTGACATAA
ATGTGTACCTCCTATACTCCAGAGCTTTCCAGGTACTAATCCACCTACTA
ATGAATACATATGGTGGTACGCATGGCTTCTGCTGCATATGTTATAGGAT
GGTCTTGTTGATTATCAGTGTTACTTTTACGCTTCTTTTACATCTATATT
ACAACACTATCATATTTCATTCATATATAAATATATAAACTCTTTTCCTT
TTTTAATATTAAAAATCTTTATTTCTAATAAAACCACCAAATTTGTATCC
ATCCTTCCTCAATCTTATTTTTTTCACAATCTCCTCTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTCTCAATGTTCTCACCCATCTTGGGGTCA
CACTGAACTCTGTTCATTCTGGTATTTTTTTTGGGAGGGGGGTTGGGGAG
AACTTGGCAAACCAGTGCCTATACCACAGCTGTGGGTGGATGTGATTGTT
TTAAAGCGTGTTCTTTCTGCCATGCTGCTCTGTGTGGCACATTTGCCACA
CAAAGCTATATAACAAGGAGACACCTTTGTCTAAAGCCTTCAACAGACCA
ATTCGTGTGAACCATTTTTACTGAGTGCCAAATCCCATAAAAGCTGGTGC
CTTACTGCTCCTGACCTTACAAATCACACTGCTAACTCCACCCAGCCCCC
TACATTAGCGATTATTTGTGCTGATCCAGAAGTGCTGGTGTGGGCCAACC
CCCCGCTTGTAAAATTGAGGTCATTTGGCTCCTATTCTTAGTTCAGACTC
CATCTGGCATCTGTGAAAATTTCCTTTCCCAAGCATCAATTTGAATGAGG
CCCATAGTACACTGAACACATAATTGAAGTTTGACATCCATCGCAGTTTA
CAATTTAATGAATTTGGCTGTTCTCCCAAGGTACATAATTCATAGGTCCA
GTTTATTAAACTTCATGTATTGTTGCTGCTTAACTTTTCCTAATTTAATT
TCGTACTCTACTTCTCTTGTGTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_g12.g1 MSMg01no137_g12.g1 CHROMAT_FILE:
MSMg01no137_g12.g1 PHD_FILE: MSMg01no137_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:05 2005
         (246 letters)



>mm_chr7_132011770_132012414
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctcaatgttctcacccatcttggggtcacactgaactctgttcattctggtattttt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtctcaatgttctcacccatctgggggtcacactgaactctgttcattctggtattttt 385

                                                                       
Query: 61  tttgggaggggggttggggagaacttggcaaaccagtgcctataccacagctgtgggtgg 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttggga-gggggttggggagaacttggcaaaccagtgcctataccacagctgtgggtgg 326

                                                                       
Query: 121 atgtgattgttttaaagcgtgttctttctgccatgctgctctgtgtggcacatttgccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgattgttttaaagcgtgttctttctgccatgctgctctgtgtggcacatttgccac 266

                                                                       
Query: 181 acaaagctatataacaaggagacacctttgtctaaagccttcaacagaccaattcgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaagctatataacaaggagacacctttgtctaaagccttcaacagaccaattcgtgtg 206

                
Query: 241 aacca 245
           |||||
Sbjct: 205 aacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)