BAC Information

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BAC

Clone NameMSMg01-138F15
Chromosome7 (Build37)
Map Location 95,030,842 - 95,196,684
singlet/doubletdoublet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138F15.T7 (MSMg01no138_f15.b1)MSMg01-138F15.TJ (MSMg01no138_f15.g1)
ACCAG344040AG344041
length704701
length of high quality
(start - end)		591 (58 - 648)529 (85 - 613)
definitionCHROMAT_FILE: MSMg01no138_f15.b1 PHD_FILE: MSMg01no138_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:22 2005CHROMAT_FILE: MSMg01no138_f15.g1 PHD_FILE: MSMg01no138_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,196,098 - 95,196,684)(95,030,842 - 95,031,370)
sequence
CTTCTTANAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGA
GAGAATCCGCGGAATTCACTTCACTTACCGTTTTTGGAAATATGGAACTA
AAAACATGATACTGCTGTAAAAGGGAGCTATCATAGCATATCCACCCTGG
GCATGATTTTTCTTAAAGTTTGTGATCTTAAATAATGTATACAATTTTCT
TGAATCTTAGTTGTCTCAGTTGTAAAATACGTGATTTCTCTTGAAGGACT
AAAACAGAAAACATTAAGATGATACAGCTGGTAGCAATGCCAGACAATCC
GGCATGCTTTTATTAAATAAGCATAGGTATGAGAAGGCTTAAGCAGTCTT
ACAAAGTAGTAGAAAAGGAGAAACATGTATGAAATAGATGTTTGCAAAGG
GTCACTCAGGCTTTGGAGATCAGTGACCTGTCACTGGTTACAGGCCCCTG
GACCAGTTCCTTCACACCCTCCAGGTTACCCTTGGACTCTGCTACTTAAC
TCTGGTAACTTGTTCTTCAGTGACATTCAGTTTCCAATCTCCAAAGCAAT
TAAGTCACTCCAGGAACCAGAAGGCTTGCTAAAGAATGTTCCTGTTGACT
TTAAAGTGTTGACATGCACTACCTTCCCTTCCTTTTCACAGCTCTGCACT
TGAAGGTACATTTCTTTGCAAGTGAAAAGCAGGAAACTATGCTAATTTCC
TGTA

TTTCANNNNTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTGACCATGGCA
TGCTTGGGAAGCAGAGATTTCATTTCACTATTAAGTAGCAGTTATCTTTG
GGAAAATGGAGGAAAATCCCATGCAGCAAGAGTAACAATGTAATGAATGT
CAACATTTTAAAAAACAAAATAAATGTCTTGTACCTTTTAGGGTTATATA
ATAAAACATTTTTATTGAGAAAGAACGGGGTTGAGAATACTCATCTTCCC
CACCTGTGATCACAGGATCTGGGAGGTTTAAAATAAAATCATTGATATTG
CCACTTTCTTAGCTGTCAATTTAGCAAACTGTACTTTCTTCTGTGTTCTT
TTCCTGATATCTCAACCTACATTCTGGCTGTTACACAGTGTTGATTCTGT
CACTAAAACTTATTTATTTTTCACACTCATTGTCACTGATAGATTCTTAA
TAACTATAAAATTTGATGTCATTATTTTTTACTTACCATAACATTCTCCA
TAGAAAAATAATATACAAAATTTCTTTTTTATTCTTTTTATTAGTTATTT
TATTTATTTACAATTAAAATGTTTTCTCCCTTTCCAGTTTCTCCTCTGCA
AATTGCTATCCCACCCCCTTGCTTCTATGAGGGACTCCCCTCCCATTGAT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_f15.b1 MSMg01no138_f15.b1 CHROMAT_FILE:
MSMg01no138_f15.b1 PHD_FILE: MSMg01no138_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
         (591 letters)



>mm_chr7_95195894_95196884
          Length = 991

 Score = 1127 bits (583), Expect = 0.0
 Identities = 586/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttcacttaccgtttttggaaatatggaactaaaaacatgatactgctgtaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattcacttcacttacagtttttggaaatatggaactaaaaacatgatactgctgtaaa 732

                                                                       
Query: 65  agggagctatcatagcatatccaccctgggcatgatttttcttaaagtttgtgatcttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agggagctatcatagcatatccaccctgggcatgatttttcttaaagtttgtgatcttaa 672

                                                                       
Query: 125 ataatgtatacaattttcttgaatcttagttgtctcagttgtaaaatacgtgatttctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ataatgtatacaattttcttgaatcttagttgtctcagttgtaaaatacgtgatttctct 612

                                                                       
Query: 185 tgaaggactaaaacagaaaacattaagatgatacagctggtagcaatgccagacaatccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgaaggactaaaacagaaaacattaagatgatacagctggtagcaatgccagacaatccg 552

                                                                       
Query: 245 gcatgcttttattaaataagcataggtatgagaaggcttaagcagtcttacaaagtagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gcatgcttttattaaataagcataggtatgagaaggcttaagcagtcttacaaagtagta 492

                                                                       
Query: 305 gaaaaggagaaacatgtatgaaatagatgtttgcaaagggtcactcaggctttggagatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaaaaggagaaacatgtatgaaatagatgtttgcaaagggtcactcaggctttggagatc 432

                                                                       
Query: 365 agtgacctgtcactggttacaggcccctggaccagttccttcacaccctccaggttaccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agtgacctgtcactggttacaggcccctggaccagttccttcacaccctccaggttaccc 372

                                                                       
Query: 425 ttggactctgctacttaactctggtaacttgttcttcagtgacattcagtttccaatctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttggactctgctacttaactctggtaacttgttcttcagtgacattcagtttccaatctc 312

                                                                       
Query: 485 caaagcaattaagtcactccaggaaccagaaggcttgctaaagaatgttcctgttgactt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caaagcaattaagtcactccaggaaccagaaggcttgctaaagaatgttcctgttgactt 252

                                                          
Query: 545 taaagtgttgacatgcactaccttcccttccttttcacagctctgca 591
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 taaagtgttgacatgcactaccttcccttccttttcacagctctgca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no138_f15.g1 MSMg01no138_f15.g1 CHROMAT_FILE:
MSMg01no138_f15.g1 PHD_FILE: MSMg01no138_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
         (529 letters)



>mm_chr7_95030642_95031570
          Length = 929

 Score = 1023 bits (529), Expect = 0.0
 Identities = 529/529 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactgaccatggcatgcttgggaagcagagatttcatttcactattaagtagcagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactgaccatggcatgcttgggaagcagagatttcatttcactattaagtagcagtta 260

                                                                       
Query: 61  tctttgggaaaatggaggaaaatcccatgcagcaagagtaacaatgtaatgaatgtcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttgggaaaatggaggaaaatcccatgcagcaagagtaacaatgtaatgaatgtcaac 320

                                                                       
Query: 121 attttaaaaaacaaaataaatgtcttgtaccttttagggttatataataaaacattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttaaaaaacaaaataaatgtcttgtaccttttagggttatataataaaacattttta 380

                                                                       
Query: 181 ttgagaaagaacggggttgagaatactcatcttccccacctgtgatcacaggatctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagaaagaacggggttgagaatactcatcttccccacctgtgatcacaggatctggga 440

                                                                       
Query: 241 ggtttaaaataaaatcattgatattgccactttcttagctgtcaatttagcaaactgtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttaaaataaaatcattgatattgccactttcttagctgtcaatttagcaaactgtac 500

                                                                       
Query: 301 tttcttctgtgttcttttcctgatatctcaacctacattctggctgttacacagtgttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcttctgtgttcttttcctgatatctcaacctacattctggctgttacacagtgttga 560

                                                                       
Query: 361 ttctgtcactaaaacttatttatttttcacactcattgtcactgatagattcttaataac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgtcactaaaacttatttatttttcacactcattgtcactgatagattcttaataac 620

                                                                       
Query: 421 tataaaatttgatgtcattattttttacttaccataacattctccatagaaaaataatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaaatttgatgtcattattttttacttaccataacattctccatagaaaaataatat 680

                                                            
Query: 481 acaaaatttcttttttattctttttattagttattttatttatttacaa 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaaatttcttttttattctttttattagttattttatttatttacaa 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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