BAC Information

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BAC

Clone NameMSMg01-138J09
Chromosome7 (Build37)
Map Location 75,746,730 - 75,747,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800
Downstream geneEG384639, Arrdc4, LOC384741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138J09.T7 (MSMg01no138_j09.b1)MSMg01-138J09.TJ (MSMg01no138_j09.g1)
ACCAG344214AG344215
length713710
length of high quality
(start - end)
506 (56 - 561)533 (82 - 614)
definitionCHROMAT_FILE: MSMg01no138_j09.b1 PHD_FILE: MSMg01no138_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:40 2005CHROMAT_FILE: MSMg01no138_j09.g1 PHD_FILE: MSMg01no138_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTNNNCATTATXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCGAGAG
AGAGCCGCGGAATTCATTTGTTAACATTATGAACCATTTTTCTTGATCTC
TTATTACTGCTCACATGTTAAATTATACTTTATTTGATGTTAATACAGCA
CTTAAAATGATTGGTAATATGATACATATTTATTCAGCATATATCTTTAA
GCTAGGTATGTTGCTATTTTTATGGTGAATGTTTTTAAACACCATGCAGT
TGGGTCATGACTTTTTTTTTTCAATAAATGCAGTATAGCAATGTTTTCTT
TTATTGGAGCGTTTGGTTGGTTCATATTTAATGTGTTGATTTGACATGGT
TGATACATGTCTATCATTGTTTTCATTTGGCACAACTTGTTCTCATTTTG
CTGTTCCTGCTTTTCAGCCTTTTTCTTTTTCTCCTTCTTGCTCCTTTCCT
CTCCTCTCTTCCTTTTCTATCCTCTCCTCCTTGTTGTCCTTACGCAAGTA
ACAAATGCATACATATGTTATTCATTGTGACTACTTTTATTTCAGACAGA
TGCACCTCCACATCTTTGTAATGATAAGATGTGATTAAACATCTTTTACT
TTTCTATACATCGATCATCTCCTTGTTGCAGTATATCTCCAAACCAAATT
AACCCGTGCAAAGAACACACCACTCAGTTATAATAATTTATAACCTGCAT
GCCCCTAAATTGG
CCCCTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGAAGGATTCTTATTC
TCAGAGCAGGAACTTATCTTCAGAAAGCAGATTAATAGCCATCTTCCTTG
AAGAGCTTTCTTCATAACAACTACACTCTATGGGCAGTGACTTATGACAA
GCAGGATCTCGTGATAAAGTGCTCAGGAAGAAGTGAGATAACATCAGGCA
CCACCCTGAGATCTACGGTCCAGTCCAAGAAAGGAGCTCTTGAGCATAAA
AAAGCTTCGGGCATTTTTCCAAAGAGGCCCTTTCTCCAACCTTTTAATGT
TGCACTGAATCAAAGACTTACAACTCTAATCCTCTCAGCATCTTTGGTTT
AACATCCTCAAAACCTTTCTTTATGCCTTCCTAAGACTTTGGTCCTGCCT
CTTAAGAGGGAAAGTCAGTCACTAGAAAAGGAGCTGAGCTTGTCTTTAGG
GAAGTTAAAAGGTGCAACTAGATATGCTACCCACTATTGGCTGTAGACAA
CGGAAGCAGATGAGAAGGGTCTGAGAGCATGGGTTGGAAATCTGTCTAAA
AATGAAGAGAAATAAAGTGAAATTGAATTACATTTTTATACGGCTTCCTT
TTGGGAGATAGGCTCAAATACTTTCTGTTTTCACACTTTAAATGAAATGT
AAATACTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_j09.g1 MSMg01no138_j09.g1 CHROMAT_FILE:
MSMg01no138_j09.g1 PHD_FILE: MSMg01no138_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:40 2005
         (533 letters)



>mm_chr7_75746530_75747462
          Length = 933

 Score =  984 bits (509), Expect = 0.0
 Identities = 527/533 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgaaggattcttattctcagagcaggaacttatcttcagaaagcagattaatagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agttgaaggattcttattctcagagcaggaacttatcttcagaaagcagattaatagcca 674

                                                                       
Query: 61  tcttccttgaagagctttcttcataacaactacactctatgggcagtgacttatgacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcttccttgaagagctttcttcataacaactacactctatgggcagtgacttatgacaag 614

                                                                       
Query: 121 caggatctcgtgataaagtgctcaggaagaagtgagataacatcaggcaccaccctgaga 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taggatctcgtgataaagtgctcaggaagaagtgagataacatcaggcaccaccctgaga 554

                                                                       
Query: 181 tctacggtccagtccaagaaaggagctcttgagcataaaaaagcttcgggcatttttcca 240
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 553 tctacggtccagcccaagaaaggagctctcgagcataaaaaagcttcgggcatttttcca 494

                                                                       
Query: 241 aagaggccctttctccaaccttttaatgttgcactgaatcaaagacttacaactctaatc 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 493 aagaggccctttctccaaccttttgatgttgcactgaatcaaagacttacaactctaatc 434

                                                                       
Query: 301 ctctcagcatctttggtttaacatcctcaaaacctttctttatgccttcctaagactttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctctcagcatctttggtttaacatcctcaaaacctttctttatgccttcctaagactttg 374

                                                                       
Query: 361 gtcctgcctcttaagagggaaagtcagtcactagaaaaggagctgagcttgtctttaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtcctgcctcttaagagggaaagtcagtcactagaaaaggagctgagcttgtctttaggg 314

                                                                       
Query: 421 aagttaaaaggtgcaactagatatgctacccactattggctgtagacaacggaagcagat 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagttaaaaggtgcaactagatacgctacccactattggctgtagacaacggaagcagat 254

                                                                
Query: 481 gagaagggtctgagagcatgggttggaaatctgtctaaaaatgaagagaaata 533
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagaagggtccgagagcatgggttggaaatctgtctaaaaatgaagagaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)