Query= MSMg01no139_b07.b1 MSMg01no139_b07.b1 CHROMAT_FILE:
MSMg01no139_b07.b1 PHD_FILE: MSMg01no139_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:21 2005
(552 letters)
>mm_chr7_126038121_126039077
Length = 957
Score = 973 bits (503), Expect = 0.0
Identities = 539/553 (97%), Gaps = 5/553 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaacaggcaatccttatgccttgcctcctgcatgctggaattcagttttgcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacaggcaatccttatgccttgcctcctgcatgctggaattcagttttgcac 264
Query: 65 catcaaggccagctgtgatctctcggctttgggggcagaattatgtatcccttttaagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcaaggccagctgtgatctctcggctttgggggcagaattatgtatcccttttaagcc 324
Query: 125 agatttcgttgttctcaaatgttagttgcttctcttccaaccttcagttctttggtttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agatttcgttgttctcaaatgttagttgcttctcttccaaccttcagttctttggtttat 384
Query: 185 ctcctgtgtgtgtgctcagtataaaaattggtatagattactctattgattagtctcaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcctgtgtgtgtgctcagtataaaaattggtatagattactctattgattagtctcaga 444
Query: 245 tacgcctttcctctctttgagatttgtgcttatt-aaaaaa----aaaaaccagtatttc 299
|| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 445 tatgccttttctctctttgagatttgtgcttatttaaaaaagaaaaaaaaccagtatttc 504
Query: 300 ctcttccatcttcttaagaccattttattcccaaatgcacatccccatcacatagccatt 359
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 505 ctcttccatcttcttaaggccattttattcccaaatccacatccccatcacatagccatt 564
Query: 360 acagttacatgctttgctttatttgctttacagtatatctacccataacccatcaactca 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 acagttacatgctttgttttatttgctttacagtatatctacccataacccatcgactca 624
Query: 420 tccctctatctgtcccatgtgctactctggaccatctcagtacaaattgcagatttgtga 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccctctatctgtcccatgtgttactctggaccatctcagtacaaattgcagatttgtga 684
Query: 480 taacatatgtcttagcccctaacacttgctctttaccctttgaagttcacattccttttc 539
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 taacatatgccttagcccctaacacttgctctttaccctttgaagtttacattccttttc 744
Query: 540 aactttatatttg 552
|||||||||||||
Sbjct: 745 aactttatatttg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 957
Length adjustment: 10
Effective length of query: 542
Effective length of database: 947
Effective search space: 513274
Effective search space used: 513274
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_b07.g1 MSMg01no139_b07.g1 CHROMAT_FILE:
MSMg01no139_b07.g1 PHD_FILE: MSMg01no139_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:21 2005
(601 letters)
>mm_chr7_126156664_126157663
Length = 1000
Score = 1083 bits (560), Expect = 0.0
Identities = 578/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 18 gtaaaaaagcaggtgatctgtgcctgtcacccacttcttactcgtggggacatgaggatc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gtaaaaaagcaggtgatctgtgcctgtcacccacttcttactcgtggggacatgaggatc 941
Query: 78 tttgaagctcactggccagccattctaaccaattctatgagcttcaggtttagtgagagg 137
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 940 tttgaagctcactggccagccattctaaccaattctatgagcttcaagtttagtgagagg 881
Query: 138 tcttgtcccaaaagccaaatggagaacaaatgagccaagatgcataacctctgaccccca 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tcttgtcccaaaagccaaatggagaacaaatgagccaagatgcataacctctgaccccca 821
Query: 198 cacatgtacatacatatacatctaagctaacaggtatatacaatacaacacactcaagag 257
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cacatgtacatacgtatacatctaagctaacaggtatatacaatacaacacactcaagag 761
Query: 258 agacatgagaggacacagaaagccataggaaagaagaccatgtaaacatgaaggacggca 317
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 760 agacatgagaggacacagaaagccatagggaagaagaccatgtaaacatgaaggacggca 701
Query: 318 ccagagaaagtcagccacaagtcaaaagagacagatggcattctcccaaaaacctttgaa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ccagagaaagtcagccacaagtcaaaagagacagatggcattctcccaaaaacctttgaa 641
Query: 378 aagaatagggcccagccagtccagagatgagtccatttgaaggtcgtacctggtccccag 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aagaatagggcccagccagtccagagatgagtccatttgaaggtcgtacctggtccccag 581
Query: 438 ttcctccatctctcttcgcttcctgtctgccttgttgtagacagcctactccccccacat 497
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 580 ttcctccatctctctttgcttcctgtctgccttgttgtagacagcctact-cccccacat 522
Query: 498 actcctgccaccatgacacgctgactcattcatggaccaaagataagtgatcacggacca 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actcctgccaccatgacacgctgactcattcatggaccaaagataagtgatcacggacca 462
Query: 558 aatcttctagaacatgaactaaaaatgatcttcttataacggtt 601
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 461 aatcttctagaacatgaactaaaaatgatcttcttataatggtt 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1000
Length adjustment: 10
Effective length of query: 591
Effective length of database: 990
Effective search space: 585090
Effective search space used: 585090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
