BAC Information

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BAC

Clone NameMSMg01-139E01
Chromosome7 (Build37)
Map Location 138,770,575 - 138,771,206
singlet/doubletsinglet
Overlap genenone
Upstream geneTacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073
Downstream geneLOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139E01.T7 (MSMg01no139_e01.b1)MSMg01-139E01.TJ (MSMg01no139_e01.g1)
ACCAG344704AG344705
length710708
length of high quality
(start - end)
88 (254 - 341)632 (74 - 705)
definitionCHROMAT_FILE: MSMg01no139_e01.b1 PHD_FILE: MSMg01no139_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:35 2005CHROMAT_FILE: MSMg01no139_e01.g1 PHD_FILE: MSMg01no139_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCAAATTTGCGGCGCTAAACGACTCCTTTTCTAACGCGCCGCGGAAN
CNNANGTTTCTGNCACGGCGNAGCAGCCNCCNGGAGGAGCCACNAAGNCN
GGAGGGNNNNACAGCCCCGGAGACNCNGANCCNGAAAGGACGCGGGACGG
CNAAGANGGANGAGNNNGGCCGGCGGNCCCGGGGCNNNCNNNCCAAACCC
CNCCGGCCAGAGAAGACAAAGCNGAGCNAAACGGGGNCGGCCATAGTTTT
ATGGAAAGAAGGGGAGGCACTGAGCACTGGAGCCAGCATGGGACCCATAA
CTGAGACACTGTTTTTTTTTTGTCAACAAGGNGGAGGGGCNAAGCGGCCC
GGGNCAAGGCGCACCCCCGCAACCACCCAGGGGAAACACCGGNGGNGNGN
CNCCAAGGANGGGCGACACCAGAGGAAGAGCCNCCAAGGACGCAACCGGG
GAGGCNACCGAGGAAGAAACGCCGGCNGNAAAGANAGCAGCACCANGGNG
GGCAAAGGCCCCAGGCNAAANAAAAAAGGGAAAAGAAGGCCACAACAGCA
GAACCCACNNNNNGGCNNCCGGGCNGGCNCNGCAGAACCAAGACAANCCC
ACGGCACCNCCACGGCCAAGGAGGACCAAAAACAGCCGACCAGAGAGCCA
AAGAATAACTACCCCCCANACAGAAGAAACAGCACACGGCACCAAGCAAC
CGAGAGAGGG
NNCCGATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACGTGACCGTCTGCGCTGGGGACTTT
AATGGTGGTTCTTGCGTTGACTTGCCCCTGGCCTTTATTCTGTCTGCATT
TTGGAAGCTTTTTGTAATTATCTGCCAGTTGACACAGGGTCTCCTTATGT
AGGCAGCTGAGGTTTGCCTTGAACTTAGGATGGTCCTCCTGCCTCAGCCT
CCTCAGTGCTAGGGTTACAGGCATGCACTATCATACCAGGCACTGCAATT
CGGAAACTCTGGAGCATTTGCAAGGGGTAGAGAGCCCCTGTAATTAAAAA
GAAGGATGAAAGCTGCTCGGGGAATGGAGCTTCTGACATTGGATTCCATC
TACTCTGCAGGGAAACAGCCCCCGGGGAACAGCCCCTTCCTTTGCTGCCC
CAATGAGGAAACATCCCATCCTTTGATAGGCAGTCATTAATCTATGGATT
AAAAACCCCACACTTAGCTACCTCCCTTGATCCCTTTTGGCACATGTTGT
AAACAGAAGAATATGGCTCCACGGGGCCAACCAGGAACCCAGGGCTGGGG
AAATGATCTCTCTGCTAGACTGGAAAAGACAGACACCCTGACTGTTTGAC
CAACAAATGTACAGAAAATAGCGGCTGGTAAGTAGCAATTACGTAATAAT
CTTGTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_e01.g1 MSMg01no139_e01.g1 CHROMAT_FILE:
MSMg01no139_e01.g1 PHD_FILE: MSMg01no139_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:35 2005
         (632 letters)



>mm_chr7_138770375_138771406
          Length = 1032

 Score = 1168 bits (604), Expect = 0.0
 Identities = 625/632 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacgtgaccgtctgcgctggggactttaatggtggttcttgcgttgacttgcccctggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgtgaccgtctgcgctggggactttaatggtggttcttgcgttgacttgcccctggcc 260

                                                                       
Query: 61  tttattctgtctgcattttggaagctttttgtaattatctgccagttgacacagggtctc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tttattctgtctgcattttggaagctttttgtgattatctgccagttgacacagggtctc 320

                                                                       
Query: 121 cttatgtaggcagctgaggtttgccttgaacttaggatggtcctcctgcctcagcctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttatgtaggcagctgaggtttgccttgaacttaggatggtcctcctgcctcagcctcct 380

                                                                       
Query: 181 cagtgctagggttacaggcatgcactatcataccaggcactgcaattcggaaactctgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cagtgctagggttacaggcatgcactatcataccaggcactgcaattcggaaactctgaa 440

                                                                       
Query: 241 gcatttgcaaggggtagagagcccctgtaattaaaaagaaggatgaaagctgctcgggga 300
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gcatttgcaaggggtagagaacccctgtaattaaaaagaaggatgaaagctgctggggga 500

                                                                       
Query: 301 atggagcttctgacattggattccatctactctgcagggaaacagcccccggggaacagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggagcttctgacattggattccatctactctgcagggaaacagcccccggggaacagc 560

                                                                       
Query: 361 cccttcctttgctgccccaatgaggaaacatcccatcctttgataggcagtcattaatct 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 cccttcctttgctgccccaatgaggaaacaccccatcctttgataggcagtcattaatct 620

                                                                       
Query: 421 atggattaaaaaccccacacttagctacctcccttgatcccttttggcacatgttgtaaa 480
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggattaaaaaacccatacttagctacctcccttgatcccttttggcacatgttgtaaa 680

                                                                       
Query: 481 cagaagaatatggctccacggggccaaccaggaacccagggctggggaaatgatctctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaagaatatggctccacggggccaaccaggaacccagggctggggaaatgatctctct 740

                                                                       
Query: 541 gctagactggaaaagacagacaccctgactgtttgaccaacaaatgtacagaaaatagcg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctagactggaaaagacagacaccctgactgtttgaccaacaaatgtacagaaaatagcg 800

                                           
Query: 601 gctggtaagtagcaattacgtaataatcttgt 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 gctggtaagtagcaattacgtaataatcttgt 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)