BAC Information

Click to search

BAC

Clone NameMSMg01-139E20
Chromosome7 (Build37)
Map Location 60,267,686 - 60,268,333
singlet/doubletsinglet
Overlap genenone
Upstream gene1700015G11Rik, EG668783, EG620782, LOC100040692
Downstream geneGm1865, LOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139E20.T7 (MSMg01no139_e20.b1)MSMg01-139E20.TJ (MSMg01no139_e20.g1)
ACCAG344742AG344743
length722723
length of high quality
(start - end)
549 (44 - 592)649 (72 - 720)
definitionCHROMAT_FILE: MSMg01no139_e20.b1 PHD_FILE: MSMg01no139_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:39 2005CHROMAT_FILE: MSMg01no139_e20.g1 PHD_FILE: MSMg01no139_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTTTGTTTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATCTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTCTCCCAATCTGTTGGTGGTCTTTT
TGTCTTACTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCGCACATT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAATTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACACAATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGGTGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGTTCTTCCATTCTATTCCATTGGTCT
ACTTGCCTGTTTCTATACCAGGACCATGCAGTTTTTATCACAATTGTTCT
GTATCAACGCTTTACGCCAGGTATGGTGATTCCACCACAGGTTCTTTTTT
CCTCTGAAACATTTTTTGCTAN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGACTGTGTTTGAAAGCCACTCTTAAAAG
CAGTGGGAGTCCAAATGCATCCTTCAAGGTCTTTCCAAGACCTTAAAAGA
AGACAGAAAAGCAAGGATGTGTGGAGAAAACCAGTGAGAATGGCAAAACA
CAAGCAGAACAGAACAGACAGAAGGGACACATCCGTTTGGGCCCAGGCAA
CCTCCTAGTATGAATTTGTTATAGTCTTTGAGTCAAATATTCTCACCAAA
GGATAGACACATTACCCACAGAGAGAAGGCTGTTCCATTTCTAGAGATAG
TGTGCATAATAAATAATAATTCTTCAGCTTCAGCACCACCCACTGTCTTC
ACTGTGTGGCATGCTGACACTGTTCACAGGCCATATCTCAGACCAGCTGG
AGAACATCATGTGCATCAACAAACTTCTCACAGTGCTTTTCAGAGATACA
CGTTTTTATCGTCATGTTATTGCGTAGAAACTGGGGACTCTCCTATAAAT
GTTTACATAGATCGCATTAAGTTTGCTTGACAGGGTTTTAGTAATTCATC
TTCATTGCCTGCCTGCGACGATCACAAAAATCAGATGGAAGTTAATATAG
CAGATCTCTATTCCTTTATTTGAGGACTATGGACAAGTAACAAGGACACT
GCCTAGCCGCTCATCCATAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_e20.g1 MSMg01no139_e20.g1 CHROMAT_FILE:
MSMg01no139_e20.g1 PHD_FILE: MSMg01no139_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:39 2005
         (649 letters)



>mm_chr7_60267486_60268533
          Length = 1048

 Score = 1185 bits (613), Expect = 0.0
 Identities = 640/649 (98%), Gaps = 1/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgtgtttgaaagccactcttaaaagcagtgggagtccaaatgcatccttcaaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agactgtgtttgaaagccactcttaaaagcagtgggagtccaaatgcatccttcaaggtc 260

                                                                       
Query: 61  tttccaagaccttaaaagaagacagaaaagcaaggatgtgtggagaaaaccagtgagaat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tttccaagaccttaaaagaagacagaaaagcaaggatgtgtcgagaaaaccagtgagaat 320

                                                                       
Query: 121 ggcaaaacacaagcagaacagaacagacagaagggacacatccgtttgggcccaggcaac 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ggcaaaacacaagcagaacagaacagacagaagggacacatctgtttgggcccaggcaac 380

                                                                       
Query: 181 ctcctagtatgaatttgttatagtctttgagtcaaatattctcaccaaaggatagacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctagtatgaatttgttatagtctttgagtcaaatattctcaccaaaggatagacaca 440

                                                                       
Query: 241 ttacccacagagagaaggctgttccatttctagagatagtgtgcataataaataataatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacccacagagagaaggctgttccatttctagagatagtgtgcataataaataataatt 500

                                                                       
Query: 301 cttcagcttcagcaccacccactgtcttcactgtgtggcatgctgacactgttcacaggc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcggcttcagcaccacccactgtcttcactgtgtggcatgctgacactgttcacaggc 560

                                                                       
Query: 361 catatctcagaccagctggagaacatcatgtgcatcaacaaacttctcacagtgcttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catatctcagaccagctggagaacatcatgtgcatcaacaaacttctcacagtgcttttc 620

                                                                       
Query: 421 agagatacacgtttttatcgtcatgttattgcgtagaaactggggactctcctataaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 agagatacacgtttttatcgtcatgttattgcgtagaaactggggactcgcctataaatg 680

                                                                       
Query: 481 tttacatagatcgcattaagtttgcttgacagggttttagtaattcatcttcattgcctg 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 tttacatagatcgcattaagtttgcttgacagggatttagtaattcatcttcattgcctg 740

                                                                       
Query: 541 cctgcgacgatcacaaaaatcagatggaagttaatatagcagatctctattcctttattt 600
           |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 cctgtgacgatcacaaaa-tcagatggaagttaatatagcagatctctattcttttattt 799

                                                            
Query: 601 gaggactatggacaagtaacaaggacactgcctagccgctcatccataa 649
           ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 800 gaggactatggacaagtaacaaggacactgcctagccactcatccataa 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space:   663282
Effective search space used:   663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)