BAC Information

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BAC

Clone NameMSMg01-139J24
Chromosome7 (Build37)
Map Location 51,705,231 - 51,705,614
singlet/doubletsinglet
Overlap geneLrrc4b
Upstream geneEtfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3
Downstream gene0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J24.T7 (MSMg01no139_j24.b1)MSMg01-139J24.TJ (MSMg01no139_j24.g1)
ACCAG344977AG344978
length695697
length of high quality
(start - end)		342 (69 - 410)384 (76 - 459)
definitionCHROMAT_FILE: MSMg01no139_j24.b1 PHD_FILE: MSMg01no139_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:05 2005CHROMAT_FILE: MSMg01no139_j24.g1 PHD_FILE: MSMg01no139_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCAAAATTTGCGGCGCTAAACGACTCCTATATTCAGAAAGGGGCGGA
ATTCTTTAAAATCGCCTCATATCTGGTTCCCCATTGTCTCTGTCTTAGTT
AGGGTTTCCATTGCTGTGAACAGACACCATGACCAAGGCAATTCTTATAA
GGACAACATTTACAGGCTTATAGGTTCTGAGGTTCAGTCCAATTTCATCA
TGGCAGGAAGCATGGCAGGCAGGCATGACACGGGAGGTGGAGCTGAGAGT
TCCACATCTTGGTCCGAAGGCAAGCAGGAACAGACTTTCTTCCAGGCAGC
TAGGAGGAGGGTCTCAAAGCCCACCCCCACAGTGACATACTTCCTCCAAC
AAGGCCACACCTCCAAATAGTGCCACTCACTGGGCCTAGCATCTTCAAGT
CTCTCAGCCCAGTCCAGCAGGAAGCTTCAGCATAGGCTTGCATGCTGGAA
TTCACACTCTGGAGTCTAAAGAATCTGTTCCTCAGAGATGAGGAAGATTC
GAACCGGGCCTCTTCACCAGAGCCCGTCAGGACCCCAGGGTCAGACAGAG
CACTGGATATAGAATCTCTGTAGCTTACTGACTCACACGCCCCCCTCCTT
TGGCTGTCTGTGTTCTGGCCCAATATACACCTCTCACACCCCCTCTTTAC
AAGTCTGGTCTACTCATGCCCCCAAGGCTCCCCATTAAATGCCAC

NTTCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCTATTTTGAAAGCTTGGTAAAA
TTGATTGATCAATTGATTAAAATGGAATCTCACTATATAGCCCATATTGA
CCTTAAACTCCTGGCAATCCTCCTGCCTCAGCCTTCTGAGTCAGTTCTTT
AGCTCTACACCTTACTAAGAGTTTGATGTCATATATGGGGCACTTCAAAG
TGTCTCACAATGTTCTTTAAGACCACATTGTAAATACCTATTCAGAATTC
GCAGAGAGGGTGTGGGGAAATTCCTTCCCTAGCCATAGCTAACTATGCAG
AGGGAGCACGGGGCAACCAACTCCAAGATGTGGGATGCCGGCTGTTAGGC
CATCCTCAAATGGGAAGTCTTTGAACCTTGAATTTCCTTCCAGGGGCCAT
GGTGGAAGGGCTGCATACAGCCTCTGTGGAGGCAGCTGCACTTTGCTAAT
TTAAATGAGCACTCGGTCCTAAGACTTTCCCTGGAAGAAGTCATCAATGG
AGATCACTCTGCAGGGCCTGCCGCGAGCTTCTGGTAAGAGCGAATGCACA
CCCCGGCACTAATTTCAATGCCCAGCACTCCCATACAAAACTTGTTGCAC
ACCTCACAATATTGATTCTGGCCCACATAAATATATACAGCCACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j24.g1 MSMg01no139_j24.g1 CHROMAT_FILE:
MSMg01no139_j24.g1 PHD_FILE: MSMg01no139_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:05 2005
         (384 letters)



>mm_chr7_51704915_51705698
          Length = 784

 Score =  743 bits (384), Expect = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctattttgaaagcttggtaaaattgattgatcaattgattaaaatggaatctcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctcctattttgaaagcttggtaaaattgattgatcaattgattaaaatggaatctcacta 641

                                                                       
Query: 61  tatagcccatattgaccttaaactcctggcaatcctcctgcctcagccttctgagtcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tatagcccatattgaccttaaactcctggcaatcctcctgcctcagccttctgagtcagt 581

                                                                       
Query: 121 tctttagctctacaccttactaagagtttgatgtcatatatggggcacttcaaagtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tctttagctctacaccttactaagagtttgatgtcatatatggggcacttcaaagtgtct 521

                                                                       
Query: 181 cacaatgttctttaagaccacattgtaaatacctattcagaattcgcagagagggtgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cacaatgttctttaagaccacattgtaaatacctattcagaattcgcagagagggtgtgg 461

                                                                       
Query: 241 ggaaattccttccctagccatagctaactatgcagagggagcacggggcaaccaactcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggaaattccttccctagccatagctaactatgcagagggagcacggggcaaccaactcca 401

                                                                       
Query: 301 agatgtgggatgccggctgttaggccatcctcaaatgggaagtctttgaaccttgaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agatgtgggatgccggctgttaggccatcctcaaatgggaagtctttgaaccttgaattt 341

                                   
Query: 361 ccttccaggggccatggtggaagg 384
           ||||||||||||||||||||||||
Sbjct: 340 ccttccaggggccatggtggaagg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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