BAC Information

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BAC

Clone NameMSMg01-140I16
Chromosome7 (Build37)
Map Location 4,115,713 - 4,115,977
singlet/doubletsinglet
Overlap geneCdc42ep5
Upstream geneSpeer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9
Downstream geneLOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I16.T7 (MSMg01no140_i16.b1)MSMg01-140I16.TJ (MSMg01no140_i16.g1)
ACCAG345649AG345650
length721720
length of high quality
(start - end)		367 (74 - 440)263 (72 - 334)
definitionCHROMAT_FILE: MSMg01no140_i16.b1 PHD_FILE: MSMg01no140_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:18 2005CHROMAT_FILE: MSMg01no140_i16.g1 PHD_FILE: MSMg01no140_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCCGCGG
AATTCTCCGGCTGATCCCCAACTTCAGTAATATGGTCAGATATAAAATTA
ATTCAAATAAATCAGTAGTCTTCCTTTATAAAAATGATAAGCAGGCTCTG
ACCCCAGGACCAGATGAGAACGCCATATTGTATCCCGGGTCCCTCAGAGA
CCAGTCTGTGCATGAGAGCGTGCAGGCTGCAGAAGCAACATAGCTTCTTG
GATAGGGTCATTTTGGGCTTTAATCTTCAGCCAGGAGGCAGAGCTGAGAC
CCAGACCTCTGCGCAATTTCCCCATCATAGGAGAGCTTGCCTGCAGAGAG
TGCTCTGACCTCTGAAACTCAGAAGAGAGCTGGACTCCCAGGAGTGCTGA
CAGAGGTTAACAGAATCACAGGAGGAACAAGCTCCAGCCAGAGACAGCTA
TAACAACGAACACCAGAGATTACCAGGTTGCAAAAGGCAAACGTAAGAAT
TTTACTAACAGTAACCATGACCACTCCACATCATCAGAACACAGCACTCC
CATCATAGCAAGTCCTGGATACCCCAAAACACCTGATAGCAAGATTCAGA
TTACATATATCTCATGATGGCGGATTTTAAGAAGCAAATTATTAACTCAC
TTATAGAACTACAGGATATCCCCGATGACCCAGTGATAGCCCTCACAGAG
GAAGCACAAAATCCCTTAAAG

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGACCCCTGCAATGTGAGAGAGGAAAG
CAGGGAAACTCCCAGCCCGTGAAACCAGAGAGCTAGGAGGTGGGGCTGCT
GAGACCCAAGGGTGCAGGACCCAGCCTGAGGCGGTGGTACTCAGACCGCC
GCATGCCTAGGTCCTGGAGCCCCTACCAGGTACGACGTGACACTTACTTT
ATTTGCCAGGTGAGATCTCCTGCAGAAAGAAGGAAAAAGGCGCCAGAGAG
GCCAGGAGGGACCCCAGCTTAAGTCGGATCTCAATTAAGTCTGGACCACG
AGGTGATAAGGTTGTAGTGCCCAGGCGTCTTCACCCGGTCGCGTGCGAGT
AAGACTGACTAGCTACCTCATAGACCAGGGACTTCGACGTACCCGACGTC
TCCCGCTGCTTTTAGCAATAGAATTGCTCCTGCTGAGATCTCCCTGCTCT
TCATGCGGGTCCTCTTGCCAGGCCTGTGCTCCACCTTCCTCCATCCTGAT
AATCTCACTCTGCTGTTCTCGCTCGCCCTATTACTTTTCCGCTTCTCGAC
TCCGTCACTACATCCTCCTCCATCTCCCTCATTTCTTTCTTTCTTTCCAT
CTTCATCTTCTTCTTCCTTTTCTTCTTCTTCCTTCCTTTTTCTCTTCCTC
ATTATTCCTTCTCTCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i16.g1 MSMg01no140_i16.g1 CHROMAT_FILE:
MSMg01no140_i16.g1 PHD_FILE: MSMg01no140_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:18 2005
         (263 letters)



>mm_chr7_4115513_4116177
          Length = 665

 Score =  470 bits (243), Expect = e-137
 Identities = 259/265 (97%), Gaps = 2/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggacccctgcaatgtgagagaggaaagcagggaaactcccagcccgtgaaaccagaga 60
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 465 ctggacccctggaatgtgagagaggaaagcaggggaactcccagcccgtgaaaccagaga 406

                                                                       
Query: 61  gctaggaggtggggctgctgagacccaagggtgcaggacccagcctgaggcggtggtact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 405 gctaggaggtggggctgctgagacccaagggtgcaggacccagcctgaggcggtggcact 346

                                                                       
Query: 121 cagaccgccgcatgcctaggtcctggagcccctaccaggtacgacgtgacacttacttta 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 345 cagaccgccgcatgcctaggtcctggagcccctaccaggtaggacgtgacacttacttta 286

                                                                       
Query: 181 tttgccaggtgaga--tctcctgcagaaagaaggaaaaaggcgccagagaggccaggagg 238
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttgccaggtgagatctctcctgcagaaagaaggaaaaaggcgccagagaggccaggagg 226

                                    
Query: 239 gaccccagcttaagtcggatctcaa 263
           |||||||||||||||||||||||||
Sbjct: 225 gaccccagcttaagtcggatctcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 665
Length adjustment: 9
Effective length of query: 254
Effective length of database: 656
Effective search space:   166624
Effective search space used:   166624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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