Query= MSMg01no141_j15.b1 MSMg01no141_j15.b1 CHROMAT_FILE:
MSMg01no141_j15.b1 PHD_FILE: MSMg01no141_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:11 2005
(522 letters)
>mm_chr7_143359098_143360019
Length = 922
Score = 516 bits (267), Expect = e-150
Identities = 297/311 (95%), Gaps = 9/311 (2%)
Strand = Plus / Minus
Query: 216 tgagcaagcccacaaagatcaagacactaagtagcactccgccatggcctctgcatcagg 275
|||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 922 tgagcaag-ccacaaagatcaagacactaagtagcactccaccatggactctgcatcagg 864
Query: 276 tgctgtctc----tttttttctgccttgagtgtctgccctgactttcctggatgatggac 331
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tgctgtctccagg----tttctgccttgagtgtctgccctgactttcctggatgatggac 808
Query: 332 aagcagctgtaaacggaaataaccctttcctctccaagtttcttttggttgtgatgtttt 391
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aagcagctgtaaacagaaataaccctttcctctccaagtttcttttggttgtgatgtttt 748
Query: 392 atcacagcaatatcaacctaagacagaagtattctgtctctaggtagaatggtgggctga 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atcacagcaatatcaacctaagacagaagtattctgtctctaggtagaatggtgggctga 688
Query: 452 ctaagcctaagagtacctctgcactatatgctcaaccagcatagaccaccatgtctcggc 511
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caaagcccaagagtacctctgcactatatgctcaaccagcatagaccaccatgtctcggc 628
Query: 512 atcatttgcag 522
|||||||||||
Sbjct: 627 atcatttgcag 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_j15.g1 MSMg01no141_j15.g1 CHROMAT_FILE:
MSMg01no141_j15.g1 PHD_FILE: MSMg01no141_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:11 2005
(395 letters)
>mm_chr7_143189908_143190707
Length = 800
Score = 642 bits (332), Expect = 0.0
Identities = 381/400 (95%), Gaps = 5/400 (1%)
Strand = Plus / Plus
Query: 1 aacaaatgaccgaggccgtggggacatgggaatgaatatatggggatatatactcttgag 60
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aacaaatgacagaggccgtggggacatgggaatgaaaatatggggatatatactcttgag 260
Query: 61 tttgagtcagcctgggctacatagtaagaccctgcctctgcccctttcccaacctctaaa 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgagtcagcttgggctacatagtaagaccctgcctctgcccctttcccaacctctaaa 320
Query: 121 -----aaaccaaaccaaaccaaaaatacttaacttctatcaccaccaactaatagaggac 175
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 321 aaaccaaaccaaaccaaaccaaaaatacttcacttctatcaccagcaactaatagaggac 380
Query: 176 agagctggtatttaataaaagaaagtactttctctcccgctctccaaaagagttctgcct 235
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agagctggtatttaataaaagaaagtactttctctcctgctctccaaaagagttctgcct 440
Query: 236 cccgctggatctgcttgctcatcaggcttgttcttgggatagaagctgagtttttcatca 295
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cctgctggatctgcttgctcaccaggcttgttcttgggatagaagctgagtcagtcatca 500
Query: 296 gcactttaggatcatcagtttgaactttactttcttatgggatttggggtttggagggtg 355
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcactttagcatcatcagtttgaactttactttcttatgggatttggggtttggagggtg 560
Query: 356 gtttagccggtcaatgaatcctattctctgagacctggta 395
||||||| || |||||||||||||||||||||||||||||
Sbjct: 561 gtttagctgggcaatgaatcctattctctgagacctggta 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 800
Length adjustment: 9
Effective length of query: 386
Effective length of database: 791
Effective search space: 305326
Effective search space used: 305326
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
