BAC Information

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BAC

Clone NameMSMg01-141M08
Chromosome7 (Build37)
Map Location 6,121,110 - 6,121,501
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787
Downstream geneZfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M08.T7 (MSMg01no141_m08.b1)MSMg01-141M08.TJ (MSMg01no141_m08.g1)
ACCAG346558AG346559
length1,2781,300
length of high quality
(start - end)
456 (96 - 551)477 (90 - 566)
definitionCHROMAT_FILE: MSMg01no141_m08.b1 PHD_FILE: MSMg01no141_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:33 2005CHROMAT_FILE: MSMg01no141_m08.g1 PHD_FILE: MSMg01no141_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCTTNTNNNNACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCTTTCTTCCTTGTCTTCTCTTTTAAATCTGAGNTCNATGGGA
AAAGGATTTTAATGAGCCTTTTAAAGCTGTATGTGCCCCCGCACCTGTTC
CCATCTTCTGCAAGAGAAAGCCTCTCTGATAGTGACTGAATGAGGCACTG
ATCCATGAGTATAGGTGAATATCATTAGGAGCCACTTTACCTACACTTTT
ATTAGTTTAAGAGCAGTAATGTTTGGGGTTTCATTAACTCTCTAGGGTAT
CTAATCTATTGTTTTTGGTAATCCAAGCACTGCCAGGTATATGTTCTATC
TGTGATGTAGTTCTTAAGTCAAATCAGACAATGGAACTGTGGGTTACTTC
CACAACATTTGTGCCACCATTGTCATGGCATATTTTGAAAGCAGGACAGA
TTTTACGTCAAAATTTTTGTGGTTGCATTGGAGTTTATGTTACAATTTTT
GGTAGCCGAAGGAACACCTTCTGGTACAAAAGGCACTGGAATCTACATAG
GGGTGAAGTCTCCGGGTAGGCTTGAGCTAGTCTTTTGCTTGTTGAGTATT
ATGTCTAGTGTCAGTTTTCAGCATTTGATTCTTTGTTTCCTTTTATATCC
TGGTCTTGTTGTCGCTTTTTAATTTAATCCTCTTTATCTTTCATTCATTT
TTTATGTTTCCCTTTTTACTCTTTCGTTATTCTTTATTCTTACTTTCATT
TTTCTTTTTTTTTACCCTTTTTATCACTTTACCCTTTATCTTTTTTTTTT
TTATTTCCCCTACTCTTTTTTTTTTTATTTCTTTTTCTATTTTTTTCTTT
TATTTTTTTTTTTTTCTTTGTTTTTTTTTTATTTTTTTCTTTCTTCTCTA
CTTCTTTCTCTCTTTTCTTTATCCTTTTATTTTCTATTTTTTTTCTTTTT
TCTTTTTTTTTTACTTTCTCCTTTTTTTTATTTTTTTTTTTTTTTATCTT
TTTCTACCTTTCTTTTTCTTCTTTTTTTTATATTTTCTTTTTTCTTCTAT
ATTTTATTCCTTTTTTCTTTTACTTTCTTTCTATTTCTTTTTCTTTTTTC
TTTCATCTCTTATAATTTTTCTGCTTTATTCTTTTTTCTTTCTCTTTCTT
TTCCTCTTTTTCTTTTTCTTTTCACTCTTTCTTACTTTCCTCCTCTTGTC
TCATCTATCTTTTTTTTTACTTTACTACTCCTCTTTTCTCTCTCCTTATA
TTTTTTATCTATTCTTTCTTCTTTATCC
CCGTTTCTTTTTTAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTTAATAGTACTGCAAAGAAC
AGAACTAAATAAGATTCCCCTGTATGAATATGGACCATCCCCGCTTCTCC
ATGCATGAGAGGGTTCCTTTAGACACAGGAGGGATTTTATCTCTTGTTTA
AAACCGTCCAATATACACTTTGAGTTTCTCCTGTACGGTCACCCACATGT
CTGACTCTCTCAGATCCAAGTTCCTGTTCCAAATACAGTGTCTTTGTTCA
CATCAGCAGAAACAAACAATCCTCAGAAGCTGCAGCCTGGGCCAGGGCAA
GGGGACAGAGCAAATAGACTAGGAGGAAGCTTCCAGCCTCCACTCCCCAC
TTGGCCAGGTGCCTGTAGGCTGGGTACAAACAAAGTTCACACAGGCCTGC
AGCCCAGCAGCTCTCCTCCCACTCCTTCACTGCTGTAATAGAGTGACCAC
CTGCATAGATTCACATTCTCCCCACCTCTCCAGAGTAGGGTTTTTTTTTT
TTTTTTTTTTTTTTTNNNNNGGGCTTTTTNTTTTTTTTTTTTTNTTTTTT
TTTTNTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTCTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTT
TTTTTTTTCTTCTTTTTTTTTCTCTTTCTTTCTTTTCTTTTCTTTTTTTT
TCCTTCTTTTTTCTTTTTTCTTTCTCTTCTCTTTTTTTTTCTTTTCCTTT
TTTTTTTCTTTTTTTTTTTTTTCTTTCTCTTTTTTCCCTTTCCTTTTCTT
TCTCTTTTTCTTTTTTCTTCCTTTCTCTCTCCTTCTCCTTCCTTCTTCTT
TCTCCTCTTCCTTTCTTCTCNTCCTTCTTTCCTCTTCTTTTCTCTTTCCT
TCTTTTTCTTCTTTTCTTCTCCTTTTTTCTTCTTTTTTCTTTTCTTCTTC
TCTCTCTTCTCTTTCTTTTCCTCTTCCTCTCTCCTTCTTTTTCCTTCTCT
TTTTCCTTCTCCCTTTCCTTTTCTCTTCTTCTTTTCCTCTCCTATCCTTT
TCTTTTTTTCTTNTCTTTCTTTTCTTTTCTTTCCTTTTTCTTTTCCTCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m08.g1 MSMg01no141_m08.g1 CHROMAT_FILE:
MSMg01no141_m08.g1 PHD_FILE: MSMg01no141_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:33 2005
         (477 letters)



>mm_chr7_6121110_6121985
          Length = 876

 Score =  665 bits (344), Expect = 0.0
 Identities = 382/400 (95%), Gaps = 11/400 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcaaagaacagaactaaataagattcccctgtatgaatatggacca---tccccgctt 57
           ||||||||||||||||||||||||||||   |||||||||||||||||   |    ||||
Sbjct: 392 ctgcaaagaacagaactaaataagattcggttgtatgaatatggaccatttt----gctt 337

                                                                       
Query: 58  ctccatgcatgagagggttcctttagacacaggagggattttatctcttgtttaaaaccg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctccatgcatgagagggttcctttagacacaggagggattttatctcttgtttaaaaccg 277

                                                                       
Query: 118 tccaatatacactttgagtttctcctgtacggtcacccacatgtctgactctctcagatc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccaatatacactttgagtttctcctgtacggtcacccacatgtctgactctctcagatc 217

                                                                       
Query: 178 caagttcctgttccaaatacagtgtctttgttcacatcagcagaaacaaacaatcctcag 237
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 caagttcctgttccaaatgcagtgtctttgttcacatcagcagaaacaaacaatcctcag 157

                                                                       
Query: 238 aagctgcagcctgggccagggcaaggggacagagcaaatagactaggaggaagcttccag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagctgcagcctgggccagggcaaggggacagagcaaatagactaggaggaagcttccag 97

                                                                       
Query: 298 cctccactccccacttggccaggtgcctgtaggctgggtacaaacaaagttcacacaggc 357
           |||  ||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 96  cctatactccccacttggccaggtgcctgtaggctgggt----acaaagttcacacaggc 41

                                                   
Query: 358 ctgcagcccagcagctctcctcccactccttcactgctgt 397
           | ||||||||||||||||||||||||||||||||||||||
Sbjct: 40  cagcagcccagcagctctcctcccactccttcactgctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space:   404422
Effective search space used:   404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)