BAC Information

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BAC

Clone NameMSMg01-141N13
Chromosome7 (Build37)
Map Location 10,877,159 - 10,985,615
singlet/doubletdoublet
Overlap geneLOC628525, LOC100042206, Nlrp4d
Upstream geneGm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521
Downstream geneLOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141N13.T7 (MSMg01no141_n13.b1)MSMg01-141N13.TJ (MSMg01no141_n13.g1)
ACCAG346613AG346614
length1,2591,238
length of high quality
(start - end)		721 (90 - 810)711 (84 - 794)
definitionCHROMAT_FILE: MSMg01no141_n13.b1 PHD_FILE: MSMg01no141_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:43 2005CHROMAT_FILE: MSMg01no141_n13.g1 PHD_FILE: MSMg01no141_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,877,159 - 10,877,881)(10,985,225 - 10,985,615)
sequence
NCCCATTACTNNNNNGTCATTGGGCGCAACGACTCCTATGGGAGAGGATC
CGCGGAATTCACTAAAAATGAATAACCCCTTTGTAGTCATTTATGGGGAG
CAAAGAAAGCAATGAACACAGGAAAGTACATAGTCCCACCCGTCTATAAT
AGATGAGGAGAGGATCCCAGAAAGAGAAGAGGTAAAGGTAGGAATTCTTG
GAGGAGTGAAGAGAAGGGAAATTGTCACAGAGAGGTAGTGTATGAGAGAA
GAAAAACTTTTCAAAAAAAAAAGGCAAGCAAAATTTTTTAAAGAGGAACC
AAAAAATTAGATAAGTGCTTAAAGAAATATTCAAGATCCTTAGGTATCAA
AGATGTGCATATTAAAACTACTTTGTTATCTTATTTTACTTATGCTAGAA
TGGCTAAGATCAACATTACAAGTTAAAGCCCATGATATTGAATATGTAGA
GCAAGGGAAAGACTCATCTATTGCTAGCAAGAATGCAAAATTGTACAGCC
ACTATGGAATCAGTGTGTCAATTTTTCAGGAAGATAGCAATTGATGGTGG
TGCATGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCATCTTTCTG
ATTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAAACAGCCAGGGCT
ACACAGATAAACCATGTCTTGAAAAAAAAAAAAAAGATCCACTCTCAAGA
GCTAGCCGTAAAAATCTTGGTCATGGACCCAAAGCATTTTTCATTCTATG
ACAAATACTTATTCAAGCATATTAAATGTAGCACCATTAACAGTGGAAGG
ACACTGGAGAAACCTAGATCTCCCTCAACACAAGAATTGATAAAGGAAAT
GTGGCACATTTTCACAGGGAAATTTTATTCATCATTAGAAAACTTAAATT
CTAGAGTGTACAGGTAAAATTAACAGAACTAGGAAAAATATTATCCAAAG
GGTGGAATTCCTAGATCCCGAAAATATAACTTAAGATATTTTTTGCCTTG
ATCCTTTCAGGGCAATAATTAATTAGTTAAAATTTATAGAACCCGAAATT
TTTTGGGAAAGGGGAAGTAAAATTACTTTTTGGTTAGAAAAGGAAAAATG
GATTAACCGATTTTTTCCCGGAAATTCAAGGGGGCCTGGAAACACCAGTT
TCTCAGTGGGGATAGGATTTGTTTATTGGAAAATCATGGGGGGAAAATTT
GTTAAAAGTCCCTTTATGTCCTCCTATATGATTTATAGGTAAATTTACTT
TTTGGAATA

NCCCAGTTCTTTNNNNAATCAAGGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAAAGCCTTCCAGGTGGAG
TGAAGTGTTAAATGAGGCCCATATTCAAGAGAGGAAAGACAATCATCCTT
GCCCTGTTTGCCTATCTTCTATTTGTGGTTTGGAGGTATGGACAGGCCAG
AATCTCTCTGACATGTTGGAGCTCAAGATAGGAGGTCTGAGTCACCTTCT
ACTCAGATATTCTCACTCCTGTGCACTCAGTGAATAAGGAGAAGGCAAGC
TGATGTCTAAAAGCTGATGTCTACATTGTTGATATCTTCAACCATGTGTT
ATATTGTGCTTGGTACAGGAAGGTACTCTGTATGCTACTAAAAGAACAAT
GTCATCACCAAGTCAGCCAGAAACCCTCCAATCTACCATGGTGTTTTGCC
TGCCAGATATGCTAGGGAAATAGTGTCACAACATTTGAAGGAATAATTTA
TCAGTATCTGATTTGACCTAAGGCTCATTCTAGAAGAAGGAACCAATATC
CAACTCTTTGTGGGTGGCTAAGTACCCGAGAATGGATAACCAAGGGATCT
AGCATAACACCAAATAATACTAGTCCAAAAAAAAAGTAGAAAAAAATTAA
CCTAATAGCATTTTGATATACTCTCAGATCAGTGCCATGCTCAGCCATCT
ACAGAGAAATCTCCTGCTGGAGATGTGAAAAGATGGGATGAAGACCTGCA
GCCAGACATATGCAGAAAGTTAGAGATTTTGAAACACTCAACCCTAAATT
GGTTGTCTTTTTTAAAACCCTCCCCTGAGGCTACAGTGAACCCTGTATAA
GAGGAGGTATAAAGAGCCAGCAGGGGTTTGAAAGACACCCAGAAAACATG
GTGCTCCTTAATCCACGGGAGTAAAGATTATATGAACTAAGAGACTGAAG
CCAGCAGCACAGGGCCTACATGGGTCTGCCCCAGGCTTTCTACTTTATAT
TATGAGTTCTGGTTTAACCTTTTTTAAAGGAATCCCGAAGGGGGGAAAAA
GGGGGTCTCCTGAACTTTTTGGTTTTCCCGAAAACTTTTCCTTCCCTTTG
TTTACCTTTTCCCCCTTTGTAAAGTAGAAGTTTTTTTTTTCCCCTCTAAA
CATTTATTTTGTCCCCGTGTTTATTTCTACCTCTTTTAAACCCGTTCTTC
TTTTGGGTGGTGATATCTTTTATTTTCTTTTTAATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_n13.b1 MSMg01no141_n13.b1 CHROMAT_FILE:
MSMg01no141_n13.b1 PHD_FILE: MSMg01no141_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:43 2005
         (721 letters)



>mm_chr7_10876961_10878081
          Length = 1121

 Score = 1317 bits (681), Expect = 0.0
 Identities = 712/723 (98%), Gaps = 2/723 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatggggagcaaagaaagcaatgaacacaggaaagtacatagtcccacccgtctataa 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||
Sbjct: 199 tttatggggagcaaagaaagcaatgaacagaggaaagtacatagtcccaagtgtctataa 258

                                                                       
Query: 61  tagatgaggagaggatcccagaaagagaagaggtaaaggtaggaattcttggaggagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagatgaggagaggatcccagaaagagaagaggtaaaggtaggaattcttggaggagtga 318

                                                                       
Query: 121 agagaagggaaattgtcacagagaggtagtgtatgagagaagaaaaacttttcaaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agagaagggaaattgtcacagagaggtagtgtatgagagaagaaaaacttttcaaaaaaa 378

                                                                       
Query: 181 aaaggcaagcaaaattttttaaagaggaaccaaaaaattagataagtgcttaaagaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 379 aaaggcaagcaaaattttttaaagaggaaccaaaaaattagataattgcttaaaaaaata 438

                                                                       
Query: 241 ttcaagatccttaggtatcaaagatgtgcatattaaaactactttgttatcttattttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcaagatccttaggtatcaaagatgtgcatattaaaactactttgttatcttattttac 498

                                                                       
Query: 301 ttatgctagaatggctaagatcaacattacaagttaaagcccatgatattgaatatgtag 360
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 499 ttatgctagaatggctaagatcaacagcacaagttaaagcccatgatattgaatatgtag 558

                                                                       
Query: 361 agcaagggaaagactcatctattgctagcaagaatgcaaaattgtacagccactatggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agcaagggaaagactcatctattgctagcaagaatgcaaaattgtacagccactatggaa 618

                                                                       
Query: 421 tcagtgtgtcaatttttcaggaagatagcaattgatggtggtgcatgcctttaatcccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcagtgtgtcaatttttcaggaagatagcaattgatggtggtgcatgcctttaatcccag 678

                                                                       
Query: 481 cactcaggaggcagaggcaggcatctttctgatttcgaggccagcctggtctacaaagtg 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cactcgggaggcagaggcaggcatctttctgatttcgaggccagcctggtctacaaagtg 738

                                                                       
Query: 541 agttccaaaacagccagggctacacagataaaccatgtcttgaaaaaaaaaaaaaa--ga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 739 agttccaaaacagccagggctacacagataaaccatgtcttgaaaaaaaaaaaaaaaaga 798

                                                                       
Query: 599 tccactctcaagagctagccgtaaaaatcttggtcatggacccaaagcatttttcattct 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tccactctcaagagctagccgtaaaaatcttggtcatggacccaaagcatttttcattct 858

                                                                       
Query: 659 atgacaaatacttattcaagcatattaaatgtagcaccattaacagtggaaggacactgg 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atgacaaatacttattcaagcatattaaatgtagcaccattaacagtggaaggacactgg 918

              
Query: 719 aga 721
           |||
Sbjct: 919 aga 921


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space:   789921
Effective search space used:   789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no141_n13.g1 MSMg01no141_n13.g1 CHROMAT_FILE:
MSMg01no141_n13.g1 PHD_FILE: MSMg01no141_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:44 2005
         (711 letters)



>mm_chr7_10985225_10986335
          Length = 1111

 Score =  710 bits (367), Expect = 0.0
 Identities = 385/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccttccaggtggagtgaagtgttaaatgaggcccatattcaagagaggaaagacaat 60
           ||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||
Sbjct: 391 aagccttccaggtggagtgaagtgttaaatgagggagatattcaagagaggaaagagaat 332

                                                                       
Query: 61  catccttgccctgtttgcctatcttctatttgtggtttggaggtatggacaggccagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 331 catccttgccctgtttgcctatcttctatttgtggtttggaggtatggacaggtcagaat 272

                                                                       
Query: 121 ctctctgacatgttggagctcaagataggaggtctgagtcaccttctactcagatattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctctctgacatgttggagctcaagataggaggtctgagtcaccttctactcagatattct 212

                                                                       
Query: 181 cactcctgtgcactcagtgaataaggagaaggcaagctgatgtctaaaagctgatgtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cactcctgtgcactcagtgaataaggagaaggcaagctgatgtctaaaagctgatgtcta 152

                                                                       
Query: 241 cattgttgatatcttcaaccatgtgttatattgtgcttggtacaggaaggtactctgtat 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 151 cattgttgatatcttcaaccatgtgttatattgtgcatggtacaggaaggtactctgtat 92

                                                                       
Query: 301 gctactaaaagaacaatgtcatcaccaagtcagccagaaaccctccaatctaccatggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  gctactaaaagaacaatgtcatcaccaagtcagccagaaaccctccaatctaccatggtg 32

                                          
Query: 361 ttttgcctgccagatatgctagggaaatagt 391
           |||||||||||||||||||||||||||||||
Sbjct: 31  ttttgcctgccagatatgctagggaaatagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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