Query= MSMg01no142_h23.b1 MSMg01no142_h23.b1 CHROMAT_FILE:
MSMg01no142_h23.b1 PHD_FILE: MSMg01no142_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:15 2005
(538 letters)
>mm_chr7_97339463_97340400
Length = 938
Score = 1017 bits (526), Expect = 0.0
Identities = 535/538 (99%), Gaps = 1/538 (0%)
Strand = Plus / Plus
Query: 1 taggtggacttctcaaaccaacagtggcctcccagaaccagagtcttcctgttgccaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtggacttctcaaaccaacagtggcctcccagaaccagagtcttcctgttgccaaac 260
Query: 61 ttccgcctaacaaattagtgtctgacgacttggattcatctttagccaaccttgtgggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccgcctaacaaattagtgtctgacgacttggattcatctttagccaaccttgtgggca 320
Query: 121 gtaagtagtcctttgattctccagtcatttttaagcttaaattgttaaaatgagtctagt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagtagtcctttgagtctccagtcatttttaagcttaaattgttaaaatgagtctagt 380
Query: 181 ttgtaaagacttttctcttttcctagatcttggcattggaaatggaaccactaagaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaaagacttttctcttttcctagatcttggcattggaaatggaaccactaagaagta 440
Query: 241 agtgcctttttttttcatttttttattagatattttcttcatttacatttcaaatgctat 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgcctttttttt-catttttttattagatattttcttcatttacatttcaaatgctat 499
Query: 301 cctgaaagtcccctataccctcctcccactctgctcccctacccacccactaagaagtgt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 cctgaaagtcccctataccctcctcccaccctgctcccctacccacccactaagaagtgt 559
Query: 361 cttgtttgtattacttaaatatcatatagaacctattctgactttcacttcagaagtaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgtttgtattacttaaatatcatatagaacctattctgactttcacttcagaagtaca 619
Query: 421 tatagagatgtcaccttggtacaataaatgttcagtatgttcatacagttcagaaacatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatagagatgtcaccttggtacaataaatgttcagtatgttcatacagttcagaaacatt 679
Query: 481 gtatgtttatgtttatttaaagtgatgtaagttggagtcaaccaggtgaaaagaagtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtatgtttatgtttatttaaagtgatgtaagttggagtcaaccaggtgaaaagaagtt 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_h23.g1 MSMg01no142_h23.g1 CHROMAT_FILE:
MSMg01no142_h23.g1 PHD_FILE: MSMg01no142_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:15 2005
(563 letters)
>mm_chr7_97429141_97430103
Length = 963
Score = 1027 bits (531), Expect = 0.0
Identities = 555/563 (98%)
Strand = Plus / Minus
Query: 1 attttataatccactcactaacgtggctcctgcccactagactggttagtttagtgggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 attttataatccactcactaacgtggctcctgcccactagactggttagtttagtgggtc 704
Query: 61 ctgcccctgaccagtctagtgactccatatcaaaactgtcacacacaggccagaagtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctgcccctgaccagtctagtgactccatatcaaaactgtcacacacaggccagaagtttg 644
Query: 121 ttagccacgttggctctgcactctttcctcccgtcttgcctcccagcctccagtcctcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttagccacgttggctctgcactctttcctcccgtcttgcctcccagcctccagtcctcac 584
Query: 181 cccaaacccagtctttcctcattggtctttcttggtcttgctttgggctgagaaagccct 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cccaaacccaatctttcctcattggtctttcttggtcttgctttgggctgagaaagccct 524
Query: 241 ggtgctcacagaaggaggctaatctctctgacaccagcctcatccaccccacctgttctt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 523 ggtgctcacagaaggaggctaatctctctgacaccagcctcatccgccccacctgttctt 464
Query: 301 ggttacacagccagacagctgaaagcctctctaacggcactggctgagcctgcttgcctt 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggttatacagccagacagctgaaagcctctctaacggcactggctgagcctgcttgcctt 404
Query: 361 tatagatcgctttctcgaactcaagcacaacgtggtgattgctcttaggcttgccgaaaa 420
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 403 tatagatcgttttctcgaactcaagcacaacgtggtgattgctcttaggcttgcagaaaa 344
Query: 421 atacaaaattactaaagaggctgcccagtctccctcagtcagctccccccctgtgctgtc 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 343 atacaaaattactaaagaggctgcccagtctccctcagtcagctctccccctgtgctgtc 284
Query: 481 ccctctatcaccgtactttagacccaaagaacttacccttgtgtggccttcctcgcctac 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 283 ccctctattaccgtactttagacccaaagaacttacccttgtgtggccttccttgcctac 224
Query: 541 tttcagtagcacaggctacctgg 563
|||||||||||||||||||||||
Sbjct: 223 tttcagtagcacaggctacctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
