BAC Information

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BAC

Clone NameMSMg01-142K17
Chromosome7 (Build37)
Map Location 51,508,987 - 51,509,305
singlet/doubletsinglet
Overlap geneAcpt
Upstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661
Downstream geneLOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142K17.T7 (MSMg01no142_k17.b1)MSMg01-142K17.TJ (MSMg01no142_k17.g1)
ACCAG347222AG347223
length1,2901,284
length of high quality
(start - end)		319 (85 - 403)---
definitionCHROMAT_FILE: MSMg01no142_k17.b1 PHD_FILE: MSMg01no142_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:38 2005CHROMAT_FILE: MSMg01no142_k17.g1 PHD_FILE: MSMg01no142_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTTNNNNTCCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCG
GAATTAAAGGCCATGCAGGCCCCGTTAAAGGGGGTGTTCCCATCGAAGAG
GCCCAGGGCCCCCCGTTAGGACAGCAGGGTGCCCCCATGCTGAAGAGAAT
TTCCAGGGATGGAAGCTAAATCAGAACCCCAGCACCTAGATTGTCTCCAG
TTAGAAGTAATCCCAGACCACTCCCATTCACATCATAGGCATTCTATAAT
GATTGTCCAAACGTGCAAATTGTGACTGGGCAGTTCCCATTCTACAGTCA
GTCCTTTCAGGACTAAAGTCTTGCTTCTCTGACCCCCTCCCTCATCTTTA
CTGTGTTTCTAATGCTGCAGTACTGTACTGTAGGAGATGAGGGTGAGCCA
AGGTTTTTTTTTTGAGATTGCATAGGCACTGTAGTCTCACCACCACCACC
ACCACCCCTGTCACTCATGCAGCAGTGCCTGCCCTTCCCAAGGACTCACA
GCTGAGTACATGACCATCTTGAGGGGCAACCCATGGCGCTGGTTCCGGTA
GAAATTGTTGAGAATAGTATCCAGCAGGATCCTTGAGGGACAGATGGTGA
ATAGAGTATGTAGATGCCTCTTCTCTATCTGTTAACCTGTTCTCTCTATC
CCATTGATTTCCACTTCTTACCCTTTGTTTATTGGTTCTTTTCTGCTGTT
TGTTGTTGTTTTCTTCTTTTTCTTTGTTATTTATATTTTATCTTTTTGTT
TTAATTTTTTTTTTTTTTCTATATGTACTTTTATTTTTTTTTTTTTATTT
TTTTTTCTTCTTTATTATATTTTTTATTAATTTTTTTTTCTTTTTCTTTT
TTTTTCTTTTTTTTTTTTCCTTTCTTTTCTCTTTTTTTTTTCTTTTTTTC
TTTTATCTTTTTTATTTTTTTTTTTTTTTTTTTATTTTTATTATTTCTTT
TTTTTTATTTTTTTTTCTTTTCTCCTTTTTTTTATTTTCTTTTACTTTTT
TATATTTTTTTTATTTTTTATTTTTTTCTCTTTTTATTCTTTTTCTTCTT
TTTTTTCGTTTCTTCTTTTTTTTCTTTTATTTCTTTATCTTTTTGTTCTT
TTCTATCTCTTATCTTTTTCTCTTTTCTCACATAATTTTTTTTTATTTTT
ATTCTTTCTTCTTTTATCTTTTTCATTCTTTTTTCTTTGTATTATTTCTT
ATTATTTTATTTTATTATGTTCTATCTTATACCTTTTCTTATTTATATTC
TATTTCTATTTATTTTATTCTATTTATTTTCTGTTCTTTA

NNNNNNAAACGATGGGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXGTCATTGAGTCCCCCCNGNNANGGNNNANGANNNN
GNNNNAGCCTTTAAAAACCCCCGNNNGANNANNNNANANGNCCNACCCAA
GAAAGACAGAGACACGGGGGAAGAAGCNNNCCCCAGGNCCCAAGCAACCC
AGGGACAGNNAAAGGGCCGGNNANCCCANNAGAGCAGCAGAGNAGGAGAG
NCGGGGGACAGGCNCCNAACAGGGANCAAGCGGAGGGGGGAGGGGCCAGG
GGGGGGGGGGAGGGACCAGGNGAGGGAGTTGAGGCCAGAAAGAGGGGGGA
CGGACGGGGGNGANAGAGGAGGGGCCAGGCGAGGGAGGAGGGGCCAGTTT
TTTTTTGGAGGGGCCANGNAACGGAGAGGAANAGGGGAAGAAAACCCCCC
CCANAANCCCCCCCCCCAAGAGGGGAGGGGGAGGAAAAAAAAAAAGGGGG
GAGAAAGCACAAGAGGAAGAAGCACAGGAAAAAGGGGAAAAAGGGAAGGA
AGAAGAAAGAAAAAAGAGAAGAGAGGAGAGGAAAGAAGAGAGAAGGAAAA
AAAGAAGGAAAAAGAGGAAAGAAAAAAGGAAAGAGAGAACAGGCAAAAAA
AGAGAGAGAGAGGAAGAAGAGAGACAAAGGAGAGGGGGAAAGAAGGAACG
AAAGGAGAAAGGCGAACGAGAGAGAAAAAGAGGAAAAGGAAGAGAAAGAG
GAAAAGGAGAAAGGAAAGGAGAAAAAGAAAAAGAAAGGAAGAAGACTCGA
GAGAAAGAGAGAAGAAGAGAAGAGAACAAAAAAGAAGAAAAAAAGGGAAG
AAGGAAAAGAGAAAGAAGAGGGGGGAGGGGAAGAGAAGAAGAAGGACAAC
GAGGAGGAGAAACAGAAAGAAGGAAAGAAAAAGAAAAGAAAAGAAGGGAC
AAAGAGAAGGAGAGAGAAAGAGAGAGAAGAAAAGAAAAAGGAAGCAGGGG
AAAAGAGAAGAGGGAAGGGGGAAAGCAAAAAGGAACAGAGAGCAAGAAAA
GAGGAGAAAAAAGAGAAGAAAGAAAAGAAGAGAAAGAGAGAAAAACGAAA
AAAGGAACAAGAGAAGANAAAGAGGAAAGACAGGAGAAGAGAGAAGAAGG
AAAGAGGAAAGCGAGAAGAAAAGAAAAGGAACAGAGGGAAAAGAAAGACA
AAGAGGGGAGGAACAAGAAGAAAGAGAGAGAAAAGAACGAAGGAAAACCA
GGAGAGGAAGGAAAAAGGAAAAGAGAACAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_k17.b1 MSMg01no142_k17.b1 CHROMAT_FILE:
MSMg01no142_k17.b1 PHD_FILE: MSMg01no142_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:38 2005
         (319 letters)



>mm_chr7_51508787_51509505
          Length = 719

 Score =  551 bits (285), Expect = e-161
 Identities = 311/323 (96%), Gaps = 8/323 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcccatcgaagaggcccagggccccccgttagga----cagcagggtgcccccatgc 56
           ||||||||||| |||||||||||||||||  |  |||    |||||||||||   |||||
Sbjct: 201 tgttcccatcgtagaggcccagggccccc--t--ggagggccagcagggtgctgtcatgc 256

                                                                       
Query: 57  tgaagagaatttccagggatggaagctaaatcagaaccccagcacctagattgtctccag 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaagagaatttccagggatggaagctaaatcagaaccccagcacctagattgtctccag 316

                                                                       
Query: 117 ttagaagtaatcccagaccactcccattcacatcataggcattctataatgattgtccaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttagaagtaatcccagaccactcccattcacatcataggcattctataatgattgtccaa 376

                                                                       
Query: 177 acgtgcaaattgtgactgggcagttcccattctacagtcagtcctttcaggactaaagtc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acgtgcaaattgtgactgggcagttcccattctacagtcagtcctttcaggactaaagtc 436

                                                                       
Query: 237 ttgcttctctgaccccctccctcatctttactgtgtttctaatgctgcagtactgtactg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgcttctctgaccccctccctcatctttactgtgtttctaatgctgcagtactgtactg 496

                                  
Query: 297 taggagatgagggtgagccaagg 319
           |||||||||||||||||||||||
Sbjct: 497 taggagatgagggtgagccaagg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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