BAC Information

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BAC

Clone NameMSMg01-142O14
Chromosome7 (Build37)
Map Location 46,867,721 - 47,028,242
singlet/doubletdoublet
Overlap geneLOC100039050, EG668540
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133
Downstream gene4930558N11Rik, EG628161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142O14.T7 (MSMg01no142_o14.b1)MSMg01-142O14.TJ (MSMg01no142_o14.g1)
ACCAG347398AG347399
length1,2421,234
length of high quality
(start - end)
556 (150 - 705)602 (133 - 734)
definitionCHROMAT_FILE: MSMg01no142_o14.b1 PHD_FILE: MSMg01no142_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:11 2005CHROMAT_FILE: MSMg01no142_o14.g1 PHD_FILE: MSMg01no142_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,867,721 - 46,868,276)(47,027,736 - 47,028,242)
sequence
NCGGTTTTTNNNNNGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTAGATTTACTGGGCCCTATAGAACACCCATTTTTCTG
CCAGGTATGAGAGTGCACCCCTGAAACTCCCGCTACTTACCGGCCAAGGC
TGGAGGATCACAAGCTCAAGACCAGCTTGGGCTGCAGACTGATTAAATTC
AGTGCTAGTCTAGGCAGTTTCCTAAGACCTTGTTTCAAAACACGAAGTGT
AAAAGGGCTGGGGAATAAAAGCTCAGTGCTAGATTGCTGGCCTGGGACGG
CCAAGACCGGGTACAGTTCAATCCCTAGCAACATACATGGAATTGTTTTT
TAAAAAATGTTTTATCCCAAAGAGATCTCAAAAACAATGATTGAATATGC
AGAACTTCATATTTATACTGCTTGGAAAACTGTTTATACAAGTTATTTTA
CCTGCTTTATTTTCCCTCTTTGAATTTCTACTTTATTTTGGAACTTAGAT
TTTTGTGTATTCTTTTACAACTTGCTAGAGGATCAAGAGACTTTGTAGCC
ATGTGACAGACGTTAATGCCTTCCTAGTTTCTTTTTAGTATGGCCATTTT
CCTGATATCATTGTACTTCTCCTTTATTTTATATCTAAAAAAGTTTAGTT
TTTAGTTTGTGTAAACAGTAAATACCCGATGTGCTTTAGTGGTTGGTCGG
ATGGCAGGATCTTGGTAACACCTGGATAGCTCAAAAGACTGGATCTATAC
AGTGTGGACCCAGTAGAAGAAAAGAGATTAGCTTCTCCTAACTAGCCCTC
AACATGGGGTAAAGGATCTAATGCTGATAACTGTACTTACCTTCTTTCCA
CCCTAAATATGCCATCTGCCTTGATAATAATAAGTGCATCCTTCCATTGT
GCGTTGCTATTTAGTTTGTTTTTATTACTTAGTTCTTATTATTCTTTTTT
TCTCTTTTTTTCTATTTTTCTTTTATATTTTTCTATATATCTCTTTTTAC
TCTATTTTCTTCTGTTATCTTCTTTTTTAATTTTCTATTCTTTTTTTTAT
ATTTATCTTTATTTCTTTTTTCCTATTCTTCCTTTTTTCTCTTTTTTTCA
CTTTTTTCTCTTATTTATATTTTTCGTCTTTTTTTNTATCTTTATCTCCT
ACTCATACTTATCCTTTCCTTTCTCCTTTACTATTTTTTTATCTCCCTTA
TTCTTCACCTCTCCATCTATCCCTTCTTATTATTCCCTTCAT
NTTTTGCTGACGTGGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTAAAGACCCCGTACAGAAAGTGAGACCGGG
TGCAACCCCTGGTGTGCCTTTGAGAGAGCCCGATCTCATTAGCTTCAGCA
GTTAACATCTCTGAGCCTTAGACGCATCTTCAGCCGAGTAGTGGGAATAT
AATGTCCACCTAGTCCATTCGCATCCTCCTGAGTCCAGGAAACAGAGAAC
ATGGATGTATTAATCACAGCAATTGCTAATAGGTAGTGAGTGAGTGCTTG
CCCCATGCCAAGCACATCTGGATGACTGCCGCAGAGCATAATAGACACAT
TAAAAAACGTTTCTTTATTCCAGTGCAGTGGCTCTCAACCTTGCTAATGT
TGAGACCCTTTAATATAGTTCTTCATGCAATGTGAAAAGCAGATCAAATG
CTTCAGATGCTTTGGAATGTTACAGATTCCCAAGTCCCTCCTCACAAGGG
TTCTAGAAGTGGCTCTCCAGTGTAGCATGAAAGTCGGGTAGGAAGCTGGA
AGAAAGCAGCTGAGGTGTCACTCATGCTACGCCAGGACTTTCAGTGATCT
ATGGCTGATAGGAAGTCGGCTATACACTTGTATGTCAGCACTCTCCACTG
CTCCTGCAAACAACCTTAGAAAATGCATTGAGACTCGAGAGTCCTTTCTT
TGGGCTGTAGTTGGTTGGCCCATCTGGACAGTCACATCACACAAAGTTAC
TCATCTACTCTCAGCATTTGCTTTCTCCTCTTGTAAAACGGTCAAGGAGA
TAACATGTCCAAGCCACTGAAGAGCACGGGCCATCCAGTGCTGGTCCTTG
TGTCCTGGACGTGTTTGATTCTTGAGTTTCCCGGCAGTCTTTCGGTTTGT
GTGTGAAATAGGGCAAGTTCCTTCTGTCCGGGAAAAAGGAATCACCAGTC
CTTGTCAGTCCCCTTTGTTTTATTTACCCCCCCCATAAATTATAAAAAGG
CTGAATTCTTGATGTTTAAAGGCCTCCTGTAACATCTCTTGGCCTGGGGA
TGGAAATCCGGTCCCTCCCCCCTCTTAGGTCTAAAAGAGTTTCTCTTCCC
GGCGAAATTGCTTCTTGGCCCCGCGTGTTTTAATTATCTTTGTTGTTGGT
CACCTAAACGTTTCTCTTGGTTCTACAATTTTTTCTCTTTTATTCTCACT
CGTTCTTCTATGTGTTGTAATCTGCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_o14.b1 MSMg01no142_o14.b1 CHROMAT_FILE:
MSMg01no142_o14.b1 PHD_FILE: MSMg01no142_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:11 2005
         (556 letters)



>mm_chr7_46867521_46868476
          Length = 956

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaggatcacaagctcaagaccagcttgggctgcagactgattaaattcagtgctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaggatcacaagctcaagaccagcttgggctgcagactgattaaattcagtgctagt 260

                                                                       
Query: 61  ctaggcagtttcctaagaccttgtttcaaaacacgaagtgtaaaagggctggggaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggcagtttcctaagaccttgtttcaaaacacgaagtgtaaaagggctggggaataaa 320

                                                                       
Query: 121 agctcagtgctagattgctggcctgggacggccaagaccgggtacagttcaatccctagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctcagtgctagattgctggcctgggacggccaagaccgggtacagttcaatccctagc 380

                                                                       
Query: 181 aacatacatggaattgttttttaaaaaatgttttatcccaaagagatctcaaaaacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatacatggaattgttttttaaaaaatgttttatcccaaagagatctcaaaaacaatg 440

                                                                       
Query: 241 attgaatatgcagaacttcatatttatactgcttggaaaactgtttatacaagttatttt 300
           |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||
Sbjct: 441 attgaatatgcagaacttcagacaaatactgcttggaaaactgtttatacaagttatttt 500

                                                                       
Query: 301 acctgctttattttccctctttgaatttctactttattttggaacttagatttttgtgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctgctttattttccctctttgaatttctactttattttggaacttagatttttgtgta 560

                                                                       
Query: 361 ttcttttacaacttgctagaggatcaagagactttgtagccatgtgacagacgttaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcttttacaacttgctagaggatcaagagactttgtagccatgtgacagacgttaatgc 620

                                                                       
Query: 421 cttcctagtttctttttagtatggccattttcctgatatcattgtacttctcctttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcctagtttctttttagtatggccattttcctgatatcattgtacttctcctttattt 680

                                                                       
Query: 481 tatatctaaaaaagtttagtttttagtttgtgtaaacagtaaatacccgatgtgctttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatatctaaaaaagtttagtttttagtttgtgtaaacagtaaatacccgatgtgctttag 740

                           
Query: 541 tggttggtcggatggc 556
           ||||||||||||||||
Sbjct: 741 tggttggtcggatggc 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no142_o14.g1 MSMg01no142_o14.g1 CHROMAT_FILE:
MSMg01no142_o14.g1 PHD_FILE: MSMg01no142_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:12 2005
         (602 letters)



>mm_chr7_47027241_47028242
          Length = 1002

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%)
 Strand = Plus / Minus

                                                                        
Query: 96   cctgagtccaggaaacagagaacatggatgtattaatcacagcaattgctaataggtagt 155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 cctgagtccaggaaacagagaacatggatgtattaatcacagcaattgctaataggtagt 943

                                                                        
Query: 156  gagtgagtgcttgccccatgccaagcacatctggatgactgccgcagagcataatagaca 215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  gagtgagtgcttgccccatgccaagcacatctggatgactgccgcagagcataatagaca 883

                                                                        
Query: 216  cattaaaaaacgtttctttattccagtgcagtggctctcaaccttgctaatgttgagacc 275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  cattaaaaaacgtttctttattccagtgcagtggctctcaaccttgctaatgttgagacc 823

                                                                        
Query: 276  ctttaatatagttcttcatgcaatgtgaaaagcagatcaaatgcttcagatgctttggaa 335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  ctttaatatagttcttcatgcaatgtgaaaagcagatcaaatgcttcagatgctttggaa 763

                                                                        
Query: 336  tgttacagattcccaagtccctcctcacaagggttctagaagtggctctccagtgtagca 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  tgttacagattcccaagtccctcctcacaagggttctagaagtggctctccagtgtagca 703

                                                                        
Query: 396  tgaaagtcgggtaggaagctggaagaaagcagctgaggtgtcactcatgctacgccagga 455
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 702  tgaaagttgggtaggaagctggaagaaagcagctgaggtgtcactcatgctacgcaagga 643

                                                                        
Query: 456  ctttcagtgatctatggctgataggaagtcggctatacacttgtatgtcagcactctcca 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  ctttcagtgatctatggctgataggaagtcggctatacacttgtatgtcagcactctcca 583

                                                                        
Query: 516  ctgctcctgcaaacaaccttagaaaatgcattgagactcgagagtcctttctttgggctg 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582  ctgctcctgcaaacaaccttagaaaatgcattgagactcgagagtcctttctttgggctg 523

                                       
Query: 576  tagttggttggcccatctggacagtca 602
            |||||||||||||||||||||||||||
Sbjct: 522  tagttggttggcccatctggacagtca 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)