BAC Information

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BAC

Clone NameMSMg01-142P08
Chromosome7 (Build37)
Map Location 66,023,066 - 66,023,550
singlet/doubletsinglet
Overlap geneAtp10a
Upstream geneGabrb3, EG668807, LOC434189
Downstream geneLOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142P08.T7 (MSMg01no142_p08.b1)MSMg01-142P08.TJ (MSMg01no142_p08.g1)
ACCAG347433AG347434
length2,3111,138
length of high quality
(start - end)
---485 (88 - 572)
definitionCHROMAT_FILE: MSMg01no142_p08.b1 PHD_FILE: MSMg01no142_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:18 2005CHROMAT_FILE: MSMg01no142_p08.g1 PHD_FILE: MSMg01no142_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCCGAATAATAAAAATGTCGCGGGNNNNAANNANNNANNNNNNNA
NNANAANNANAAAAANGAAAAAGCCCCTCTTTAAAGAGAGGTTGTGTTTT
TTTTTTCCAACANACCCCCNANNANTGNTGNTANGGAGAGTGAGTGTGGA
GTAGAGTGTAGTGATGTAGAGTGTGGTNATGGNAGATGGTTGTAGTATGT
ATATTTATTATTATGATATAGTGGTGATATATGGGTATTATTGATGTATG
TAATTGATTTGATATTGATTGGTTAGTGGAGGTGATGTGGATGTTATTAT
TTTGTGTTAGTTAGTTGATTTTTGGTGTGTTGTTGTGTGATTAGTTGTTT
ATATTGTGGTTTTATATGGTTGAAGTATTTTATGTGATGTTTAAGTTGTG
TGTGATAAATATATATTGATATAGTGTGTAATTTANATTGATAATGATTG
TGTATTGTATTGTAGATTTGTTTTTTGTTGATATTATGTTTTGTGTGGTG
TGTATAGGTGGAGTATATGAGAGGGGGTGAATAGAAGTATGGTAGTTGGT
GTTAATTATTGGTAATGANTGGGAATAGTAGAGAATGGAGAGAAGAGTGT
GTTTTTTTTTTATTTTTTTGTTTTATAGAGAAGGAGAGGAAAGGAATGAG
GAAGTTGTATTGTTTGGAGTGGGGTGGTTGGATTATNAATAGTACTCGTC
GTGTGTATTTGTAATTTGTATGTTCTCCCGCTAGTGTGTATTGGGTGTAT
GTATGATGGTTGATATATGTGTAATATTGAAAGAAATGAGTTATGGGTGT
GGTTATAGAGTATATAGTAATGGATTGTGATAAATGAAATATATTGTTAT
TTGTTATGCTTATGTGATGTGTTTAGTTGCTGTTATTTGGTTATGTGTTG
ATGTGTGTTTGACTAGTGGTATGGGATGGAGATGGTATTGTAGTAGAGTA
GTATGATTATATTTTGTTGTTGTTANAAGATGATTTAATTGATATGTAGT
TTGAGGATATTATGTTANTTTATAGTATCTTTGTTGGTGTGATTATATAG
TGATTGTTGTGTAGTTGTGACATGTGGTTATGAGATGAGTTATGAATAGG
AGAGTACTCTGTGCTTATTATATGATAGTTATATTAAGTATAATATTAAG
GTATATATTATAATGATATGTGATTTGTGATTATGCTTAGTATATGATGT
ATTGNTGTGGTCTGTTAGTTAGTAGCGTTATANATGTGAATAGAGTTGTT
NGTGGAATTGTGTGTGTGAGCTGATGTTTGTTGTGATGGTATTGTGAGTG
GTAGATTCAGGAAGTGTGTTGATTAAGATACGTATGAGNTAGTAGATATA
TAATGACGAGTTGTATTATGATTTATTGCTATTGTCGTATGTATGTGATA
TGATAGATATAGTNTGAATTTGGTGAGTGTNAGAGTAGACTAGTGTAATG
ATGTTGCGTAAGTACATTGATATGTGTCGTGTGATGTATATTGTTGTTAG
TGAGGTGATGTAGTGTGATACAGTAGATTATATGTGGTGATTATGTATGT
CTATTTTATGTGTGTGATAGTATGTGCGTGAGGTATGATATNGATATTTG
AGTTGTATGTATGCAGATGTTAGTTGTGTATATAGTAGATATGTCGTGAT
GTGATATATAGTGTATATGTGTGTGGANATCTGTTANTATATATANGTTN
ACGAATGTGTATGATGATGTATATGTGTAGATTAGTGTGTGAGATNTAGT
ATATGAATTTAGTGTAACGAGTATATAGATGTGTGATTTGTGTGTTGTAT
TGTTGGTAGCATGGTTCGAGTAGTGTTATTGNATGTAATANATGTAGTGT
CTGCTTATGCATGAGTGTAGATGAAGGTGTTGAGCTCTCATTGGGTATAT
GATGGAGTATGTNGCATATGTATTACTGTAGTATGATAGTACGAGTTAGA
TATGAGTGTACTATTAGTGTATATATAGTAGTTAGTGTTGCATGATATGN
GTATATGTGTAGTCGTATTACTCATGTGTAGAGATTGTGAGATGCACATG
TGATTGATGAGTGATGATGTTATNGTAGTCAGAGTAGATTGTGATTCATG
ATGATGTATATGGTTNGTGGNATGTTGAATGCACGTTGTTGTTCATGTAT
NGTGTGNAGAGTACGTGTAGTAGTTGTAGANTNGTGATTNGTTGATGCAT
GTTCTAATATGTGGAGNTANTATATATTNATTNTATCGATACTATATGTG
TGCTGGATANTATGTGATTATATGAATATGATGATATGTCTAGCGTATTA
TGGTAGTAGTG
NGATTATNNNNNAAAGATTGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGCTCAAGCACGGTACTCTGAG
GCTTTTGATTTTTGCTACCATCTAAATGGAGCTCCCAGGGTTCTGGGCTG
TGAACCAGCCAGGAGGCAAGAGAACAAAGGACGAAAAGGTGGGAAGGGAG
AGGAGGGAACGGCTCCTACAAGCAGAACGGAATCAGGGAAAAGCTGGCTT
TCTACTCTCAAAGAAATGTCCCTTTAATCTCTAATACTTGGGTTTATGAC
AAGAAAATTTGCAGTTAGAAGAGAAATGTGTAAAAACCCAGACTCTCGTC
CTCAATACCTATCAGATATGTTGGGCTTCCTGGAGGCCCCCAATGGTATG
GACATGTGTGAAGTTGTCCCTGAAGAAGGACCTGATGCTCTTCTTGGGGC
ATCTGCTTTGATACCCTGGAAATGATGATGCCAGGAAATGGTGAGACCCA
CATAGAACTGTGAGACCCACCAGAACATATACTATGTTACTTGTATGCAT
GAGCATAATAGAAGAACCTTAAATAGCATCATCACAGCAATTGTGGTATA
TTAAATTTAATTTAAATGGGAGGAATGTCATCTGAACACATACCTATTTA
ACAAACAGGCTTGAATTCCCTCCTACATGTCAGAGGAGCCATAATGGACT
GGACCCCTAACTTCCTTAACAAGTTGAAGATTTTGATTAGTCCAACCAAT
GCCGGCAAAGTTCACTCACTCATTGGTTCACCCACTCATTTAGTATAGTA
TTGGCCCAGTGGCCCTCTGGGAAATCTCGCAACACTGCCAGGCTTGCCTG
CAGCACAGATTGCTTTCCCAGTGCAGAAATAAAATGGGGCAATTACTTCC
TCCATTTTGGGTTAAAATGCTTGCCTAAATTAAAATCAGAATTTTTTAAA
AACTGCCCCGAGACCCCCCACGTAGATTTCTCGGCTGTGCGAAAAATCAC
TCCTAACTTTTTTTCTTGGATGAAAACACTCTTTGTGCCCTTTTAAACAA
AAAAATCTTCTTGTTTTTGCAATATTCGGGAAATTTCCCCCTTCCACCCC
TTCTTCAACCCTCTACCTTCTCCCCCGGCGCCTGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_p08.g1 MSMg01no142_p08.g1 CHROMAT_FILE:
MSMg01no142_p08.g1 PHD_FILE: MSMg01no142_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:18 2005
         (485 letters)



>mm_chr7_66022866_66023750
          Length = 885

 Score =  884 bits (457), Expect = 0.0
 Identities = 478/485 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acggtactctgaggcttttgatttttgctaccatctaaatggagctcccagggttctggg 60
           ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 acggtactctgagccttttgatttttgctaccatctaaatggagcttctagggttctggg 260

                                                                       
Query: 61  ctgtgaaccagccaggaggcaagagaacaaaggacgaaaaggtgggaagggagaggaggg 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctgtgaaccagccaggaggcaagagaacaaaggactaaaaggtgggaagggagaggaggg 320

                                                                       
Query: 121 aacggctcctacaagcagaacggaatcagggaaaagctggctttctactctcaaagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacggctcctacaagcagaacggaatcagggaaaagctggctttctactctcaaagaaat 380

                                                                       
Query: 181 gtccctttaatctctaatacttgggtttatgacaagaaaatttgcagttagaagagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccctttaatctctaatacttgggtttatgacaagaaaatttgcagttagaagagaaat 440

                                                                       
Query: 241 gtgtaaaaacccagactctcgtcctcaatacctatcagatatgttgggcttcctggaggc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtaaagacccagactctcgtcctcaatacctatcagatatgttgggcttcctggaggc 500

                                                                       
Query: 301 ccccaatggtatggacatgtgtgaagttgtccctgaagaaggacctgatgctcttcttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccaatggtatggacatgtgtgaagttgtccctgaagaaggacctgatgctcttcttgg 560

                                                                       
Query: 361 ggcatctgctttgataccctggaaatgatgatgccaggaaatggtgagacccacatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcatctgctttgataccctggaaatgatgatgccaggaaatggtgagacccacatagaa 620

                                                                       
Query: 421 ctgtgagacccaccagaacatatactatgttacttgtatgcatgagcataatagaagaac 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 621 ctgtgagacccaccagaacatatactatgtcacttgtatgcatgagcataatagaagtac 680

                
Query: 481 cttaa 485
           |||||
Sbjct: 681 cttaa 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)