Query= MSMg01no143_n10.b1 MSMg01no143_n10.b1 CHROMAT_FILE:
MSMg01no143_n10.b1 PHD_FILE: MSMg01no143_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:29 2005
(586 letters)
>mm_chr7_81305599_81306584
Length = 986
Score = 600 bits (310), Expect = e-175
Identities = 340/350 (97%), Gaps = 1/350 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctgggactccaggtaagaaaactttcaccaggaattacagtaatatttcagtg 63
||||||||| |||||| |||||||||| ||||||||||||| |||||| |||||||||||
Sbjct: 349 ggaattccttggactcaaggtaagaaagctttcaccaggaactacagtgatatttcagtg 290
Query: 64 gtatgtagtctgacatgagacatacctacttattaatatttgatgaactacttgagagtt 123
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 289 gtatgtagtctgacatgagacatacctactaattaatatttgattaactacttgagagtt 230
Query: 124 tcatatgctacattttggttatatttatccccctctcccatctcattcccattccatagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tcatatgctacattttggttatatttatccccctctcccatctcattcccattccatagc 170
Query: 184 cactcaactttgtgtgttctttaaaaacaaaaaaccaggggtcccactactgccgcctat 243
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 169 cactcaactttgtgtgttctttaaaaacaaaaaacca-gggtcccactactaccgcctat 111
Query: 244 atacccttaaacatgtggccatccactagaatgtgtggactgcttgaggctacacccttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 atacccttaaacatgtggccatccactagaatgtgtggactgcttgaggctacacccttt 51
Query: 304 aaaaacttaactctcctttgcccagcagctatcaattgcccacagcttct 353
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 taaaacttaactctcctttgcccagcagctatcaattgcccacagcttct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_n10.g1 MSMg01no143_n10.g1 CHROMAT_FILE:
MSMg01no143_n10.g1 PHD_FILE: MSMg01no143_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:29 2005
(494 letters)
>mm_chr7_81204677_81205569
Length = 893
Score = 853 bits (441), Expect = 0.0
Identities = 481/495 (97%), Gaps = 3/495 (0%)
Strand = Plus / Plus
Query: 1 agattggaggctttaggggatgagtaatctatggggactctaccctcatggccttataaa 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattcgaggctttaggggatgagtaatctatggggactctaccctcatggccttataaa 260
Query: 61 tgggaaaagtgagcaagtttaacttttcatctgtcatgagaacacaacctgtgtcccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaaaagtgagcaagtttaacttttcatctgtcatgagaacacaacctgtgtcccctc 320
Query: 121 ttgaggacacaatgacaaaattctatcttgaagcataggacatccctcagtggact-tga 179
|||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct: 321 ttgaggacacaatgacaaaattct--cttgaagcataggacatctctcagtggaccctga 378
Query: 180 ccaggagggtaagcaacacatttctattgcttattgattttccagtttgtggcattttgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaggagggtaagcaacacatttctattgcttattgattttccagtttgtggcattttgc 438
Query: 240 tggagcagaatgaatagattaagctgccaccacagatgggtccgagacttacataaagct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggagcagaatgaatagattaagctgccaccacagatgggtccgagacttacataaagct 498
Query: 300 accccatctatgagtgagtggtttgaaaactaccaagaaccctaaccaagggtagagagc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 499 gccccatctatgagtgagtggtttgaaaactaccaagaaccctaaccaagggtggagagc 558
Query: 360 atacacccagtgtgagcaactttggcagactccaggaagaagtccctctggtgtgtgcac 419
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atactcccagtgtgagcaactctggcagactccaggaagaagtccctctggtgtgtgcac 618
Query: 420 accagcccactgcctctgcatggaggccagctgtaaacaggaacggctcagaaacattga 479
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 619 accagcccactgcctctgcatggaggccagctgtggacaggaatggctcagaaacattga 678
Query: 480 ttcccacccagccag 494
||||||||||||||
Sbjct: 679 ctcccacccagccag 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
