Query= MSMg01no144_f02.b1 MSMg01no144_f02.b1 CHROMAT_FILE:
MSMg01no144_f02.b1 PHD_FILE: MSMg01no144_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:07 2005
(504 letters)
>mm_chr7_76018388_76019293
Length = 906
Score = 727 bits (376), Expect = 0.0
Identities = 474/512 (92%), Gaps = 12/512 (2%)
Strand = Plus / Minus
Query: 5 gaattcaggaag-ttaccagggctgaacctctaactttttatcccccggttacccgagta 63
|||| ||||||| || ||||| || ||||||||||||||||||||| |||||| |||||
Sbjct: 776 gaatgcaggaagcatatcagggttggacctctaactttttatcccccagttacctgagta 717
Query: 64 tcaccttgtactgtgaacactcgccaagagaagagacattttcattcagttccagcctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tcaccttgtactgtgaacactcgccaagagaagagacattttcattcagttccagcctga 657
Query: 124 gtacccagtgtcccatagataaaacgtactgtgtcttcaggaagaagtcttcttatctac 183
|| ||| |||| |||||||||| || || ||||||||| | ||||||||||| ||||||
Sbjct: 656 gtcccctgtgttccatagataagacatattgtgtcttccgtaagaagtcttcctatctag 597
Query: 184 ttctgtatgatacccaaaagcaacagaggtgcttcttatacagtgctttgttttccattt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 596 ttctgtatgatacccaaaagcaacagaggtgcttcttatacagtgctttgttttccgttt 537
Query: 244 gaaaccgatggcttctaggcgcagtgttacacacgcacacagagttccttcattccagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaaaccgatggcttctaggcgcagtgttacacacgcacacagagttccttcattccagct 477
Query: 304 ttctgaggg--tttttttttaagtataaatcattttcgacagttttaaaggaattgcatt 361
||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct: 476 ttctgaggggttttttttttaagtataaatcatcttcgacagttttaaaggaagtgcgtt 417
Query: 362 ttcattttttgc-----c----ttggttagccctccgtccctctctccttcatcctttcc 412
|||||||||| | | |||| |||||||| ||||||||||||||||||||||||
Sbjct: 416 ttcatttttttcatgtacagttttggctagccctctgtccctctctccttcatcctttcc 357
Query: 413 ccagttgctttttaaccaccagaatttctgaccccactttcagagcccatatactttact 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccagttgctttttaaccaccagtatttctgaccccactttcagagcccatatactttact 297
Query: 473 ccctatcccccttaaggcttccactacctctc 504
| ||||||||||||||||||||||||||||||
Sbjct: 296 ctctatcccccttaaggcttccactacctctc 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 906
Length adjustment: 10
Effective length of query: 494
Effective length of database: 896
Effective search space: 442624
Effective search space used: 442624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_f02.g1 MSMg01no144_f02.g1 CHROMAT_FILE:
MSMg01no144_f02.g1 PHD_FILE: MSMg01no144_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:07 2005
(507 letters)
>mm_chr7_75860189_75861099
Length = 911
Score = 915 bits (473), Expect = 0.0
Identities = 500/511 (97%), Gaps = 4/511 (0%)
Strand = Plus / Plus
Query: 1 cagtgtcagacaaggcaatggcctagagcttacttagactcccctgagaggcagctcatg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtcaggcaaggcaatggcctagagcttacttagactcccctgagaggcagctcatg 260
Query: 61 gtatgctgaccgtgatcaagaggagccagctgctttaagtacacaagtgcccagaatata 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 gtatgctgaccgtgatcaagaggagccagctgctttaagtacacaactgcccagaatata 320
Query: 121 catattgcctatcttctgtcttcgtaccaggttcatgtgaagctttgtatagcaggaaaa 180
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatcgcctatcttctgtcttcataccaggttcatgtgaagctttgtatagcaggaaaa 380
Query: 181 taggaagcaatctgagtccccactgggagtatggtgctttaattagtcattgttggatcg 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaagcaatctgagtccctactgggagtatggtgctttaattagtcattgttggatcg 440
Query: 241 tagtctaggtgatcacactgccataacatcatgttgatggagaacattttaggttccagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtctaggtgatcacactgccataacatcatgttgatggagaacattttaggttccagc 500
Query: 301 ataggcactggaaaagaatacaggacaacagtaatattttatttgatatatgtaatattt 360
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ataggcgctggaaaagaatacaggacaacaataatattttatttgatatatgtaatattt 560
Query: 361 gaattcagtcatagctaacacacagtgtaaa----cacttaaaacattgatttatttata 416
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gaattcagtcatagctaacacacagtgtaaataaacacttaaaacattgatttatttata 620
Query: 417 tgtggagtattgatttcctccatactttgaaattttatataagcaagacaaaacttattc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggagtattgatttcctccatactttgaaattttatataagcaagacaaaacttattc 680
Query: 477 tattcttctcctccccattgcctttctacta 507
|||||||||||||||||||||||||||||||
Sbjct: 681 tattcttctcctccccattgcctttctacta 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 911
Length adjustment: 10
Effective length of query: 497
Effective length of database: 901
Effective search space: 447797
Effective search space used: 447797
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
