BAC Information

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BAC

Clone NameMSMg01-144J18
Chromosome7 (Build37)
Map Location 18,933,761 - 18,934,009
singlet/doubletsinglet
Overlap genePsg18
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1
Downstream geneLOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144J18.T7 (MSMg01no144_j18.b1)MSMg01-144J18.TJ (MSMg01no144_j18.g1)
ACCAG348636AG348637
length737737
length of high quality
(start - end)
249 (73 - 321)345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no144_j18.b1 PHD_FILE: MSMg01no144_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:29 2005CHROMAT_FILE: MSMg01no144_j18.g1 PHD_FILE: MSMg01no144_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGGCGGAATT
CCAGAAGGTGTTCTCAGAGGACTACACTTGCCAAAAGGACCTGTGTCCTT
TGTCCATCACTATGGAGACACTGGCCTTCCTGTGAAGCCTAATAAGGCCA
TCCAAACAGCTAGTTAGGGGCCTGGGATCCCAGATTGTCCTCTCCAGCAA
TGCATTCCTGGGTGAGTCTCTGTGGAAGATGTCCAGGGTAACTATCATAA
CTGTGGCTCCTGACAGTGCACTGGATGTTGACACAAGTTAGACAGCCTTG
TACCGTGTCAGCTCCAACAGGATTTCATAGCCAAGCAAAAACAAAAATAT
TTCTAAGTTTCACAGAGATTTCCATCCAGGCCTCATAGTGCTCTGTGTGG
GGACTCCACAGCCCCCTCTGCTAGAGCTTATGCTACCTCCACAGAGGGAG
TCTATATTAGGGATATAGGCATGGTGAGAGTCCCAAGGGTCAATGCTGAG
TCTCACATTCTTGGGCTGAGTTTTTCCAGCACATGATAGGTAACTCTGCA
TGAAAAAAAAGGTGAAGGGTTCCGACCTAATGGCGTTAGTACAGACCATG
TGTGCCCTTGCACAAGTGCTCAAATACCAATGTGACGAAAAATGCAGTGC
AGGAGATAGCAGGTACCATCAATTCCTACCAGTCGACTTATTTTGTACCA
TAATCCTCCCCCACACTTTGAACTCCATAAAAGTCCG
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTATAGAGGAGCTAAGATCAGTTCCTA
GCACATCCATGGCTGCTTATAACTGTTTGTCACTCCCATTTCAGAGGACC
CAATGCCACTTTCTGACCTGTGTTGGCCAATTTCTGACCTGTGTTGGTAT
AAGGCATGCTGTTATGCACAGATATCATGTTGCTAATATAACGATATATA
AAAAATATTATAATAAAGCCACCAGTCACCTTTGTATCACAAATCATATC
TACAAGGTCCTCACCTGTGGAGTATATGGCATTCCATGTGAAGGAAGAGT
GTCGTTTTCTCTCAAGCCTGCCTGCCTGACTCTCATACCCTCCATTCTTC
TGAGGCTCATAGCCCCCCCCCCGCGGTCCTGTGCTTCACGCCAGTCACCA
TGGAACTCCTGGGAAGGTTGGCACATGTTATGATGGTCTAGCCTGGGTAG
AGCTGAATTCCAGCCTTGCTCATTGTCTCATGTAAGATTTCTAAACAGAC
ATCAAGCCCTGAGGGCAGGCTGTGTGCGCTTCTAAGGGAAGTTCATTGCC
CATTCTTCTTACATTTGATCTCTATCACCTCTTCCATAATCTCTGTCTTT
TACCGTGCTGCTCCTATCCTTCTACTGGCAGCTCTTCTTACCTTCTCTTC
ATCACTTCCCTGCTTGCTTGTTATTTTCTCTTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_j18.b1 MSMg01no144_j18.b1 CHROMAT_FILE:
MSMg01no144_j18.b1 PHD_FILE: MSMg01no144_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:29 2005
         (249 letters)



>mm_chr7_18933561_18934209
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacttgccaaaaggacctgtgtcctttgtccatcactatggagacactggccttcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacacttgccaaaaggacctgtgtcctttgtccatcactatggagacactggccttcctg 260

                                                                       
Query: 61  tgaagcctaataaggccatccaaacagctagttaggggcctgggatcccagattgtcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagcctaataaggccatccaaacagctagttaggggcctgggatcccagattgtcctc 320

                                                                       
Query: 121 tccagcaatgcattcctgggtgagtctctgtggaagatgtccagggtaactatcataact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagcaatgcattcctgggtgagtctctgtggaagatgtccagggtaactatcataact 380

                                                                       
Query: 181 gtggctcctgacagtgcactggatgttgacacaagttagacagccttgtaccgtgtcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggctcctgacagtgcactggatgttgacacaagttagacagccttgtaccgtgtcagc 440

                    
Query: 241 tccaacagg 249
           |||||||||
Sbjct: 441 tccaacagg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)