Query= MSMg01no144_k03.b1 MSMg01no144_k03.b1 CHROMAT_FILE:
MSMg01no144_k03.b1 PHD_FILE: MSMg01no144_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:30 2005
(681 letters)
>mm_chr7_61923144_61924224
Length = 1081
Score = 822 bits (425), Expect = 0.0
Identities = 522/563 (92%), Gaps = 22/563 (3%)
Strand = Plus / Minus
Query: 5 gaattctttctgggacgcccctctgc-----cttcaagggtgaggattggtgagatttca 59
||||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct: 554 gaattctttctgggacg------ggcagagacttcaagggtcaggattggtgagatttca 501
Query: 60 gttcct-a-----gatcagctcagtagttgttgggttttcctgtttagggattgatgggt 113
||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 500 attcctgagcttggatcagctcagtagttgtttggttttcctgtttagggattgatgagt 441
Query: 114 ttatatatcttaggcctggttttgggctcaggggcaagtcaaagccagggtgtattttct 173
||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||
Sbjct: 440 ttatatatcttaggcctagtctcgggctcaggggcaagtcaaagccaggttgtattttct 381
Query: 174 ttgaccttttaccctacgatgtgtgcaactgaactccaatgtccagtgcatgtgtactat 233
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgcccttttaccctatgatgtgtgcaactgaactccaatgtccagtgcatgtgtactat 321
Query: 234 gtgcactgactcttacaatcattctatttctttttctgtgacactttaagccttgatggg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 320 gtgcactgactcttacaatcattctatttctttttctgtgacactttaagccttgctggg 261
Query: 294 agggaagtgacatggatgttccatttagaactgaacactcaacaactcttatcctttgca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agggaagtgacatggatgttccatttagaactgaacactcaacaactcttatcctttgca 201
Query: 354 aatggccagctgtgagtctctgcattaatccctatctactatgaaagaagtttctctaat 413
|||||| |||||||||| |||| ||||||| ||||||||| |||||||||||||||||||
Sbjct: 200 aatggctagctgtgagtatctgaattaatcactatctactgtgaaagaagtttctctaat 141
Query: 414 catggtagacaggtgaactaatctgtgttaaaaaaagatgatttaggcatagtctcttac 473
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 140 catggtagacaggtgaagtaatctgtgttaaaaaa-gatgatttaggcatagtctcttac 82
Query: 474 tatgtacatttaccagaataggaggagaaggacg-ttctcctctagaacctctgacc-ac 531
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct: 81 tatgtacatttaccagaataggaggagaagga-gattctcctctagaacctctgaccta- 24
Query: 532 gcaagccaaagatttggggccaa 554
||||||||||| |||||||||||
Sbjct: 23 gcaagccaaagttttggggccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_k03.g1 MSMg01no144_k03.g1 CHROMAT_FILE:
MSMg01no144_k03.g1 PHD_FILE: MSMg01no144_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:31 2005
(644 letters)
>mm_chr7_61792691_61793734
Length = 1044
Score = 1232 bits (637), Expect = 0.0
Identities = 642/644 (99%)
Strand = Plus / Plus
Query: 1 agtaacaggtacagttggagctaaaatattcttacataattatcttctcattgggagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaacaggtacagttggagctaaaatattcttacataattatcttctcattgggagaaa 260
Query: 61 ttagtcattcattaaatatggttattcccttagtagtttattaattgctaagtgaaaatt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattcattcattaaatatggttattcccttagtagtttattaattgctaagtgaaaatt 320
Query: 121 gtatggtttttaattacacaaattgtcctagaagaggagatatgctttaagcacagtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatggtttttaattacacaaattgtcctagaagaggagatatgctttaagcacagtaag 380
Query: 181 ttatgaatacttaaattactataccctttcaccatgataaaacaattaaaatttaaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgaatacttaaattactataccctttcaccatgataaaacaattaaaatttaaatta 440
Query: 241 aagcacaatgaaatgagaatccagtctcatatgcataatgcaaactagccaaatgcaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcacaatgaaatgagaatccagtctcatatgcataatgcaaactagccaaatgcaatc 500
Query: 301 tatttgtaaataagagaggtaggattcattactgggctaatatgtagcaaaattaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttgtaaataagagaggtaggattcattactgggctaatatgtagcaaaattaaattt 560
Query: 361 aaaaacctctatccaaaatacgaatataaaatacaaaaagaattgcccgattacttaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaacctctatccaaaatacgaatataaaatacaaaaagaattgcccgattacttaact 620
Query: 421 cactaaatttttctcaaatcatataactaatgtaaaaatgagtaattacatatatgtcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactaaatttttctcaaatcatataactaatgtaaaaatgagtaattacatatatgtcat 680
Query: 481 atgagggtaaaatcaagtaaatgtaaattacatgctaccttatgatcatttttaacaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgagggtaaaatcaagtaaatgtaaattacatgctaccttatgatcatttttaacaaga 740
Query: 541 gaaagattgtatgtaagttttcatgtagganaatgttatattattggacatttgcacaca 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 gaaagattgtatgtaagttttcatgtaggaaaatgttatattattggacatttgcacaca 800
Query: 601 ccaacaaaattagtatgtaagattgtgtttctagattatgggaa 644
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccaacaaaattagtatgtaagattgtgtttctagattatgggaa 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
