BAC Information

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BAC

Clone NameMSMg01-144K16
Chromosome7 (Build37)
Map Location 78,395,482 - 78,395,839
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144K16.T7 (MSMg01no144_k16.b1)MSMg01-144K16.TJ (MSMg01no144_k16.g1)
ACCAG348676AG348677
length756782
length of high quality
(start - end)
361 (46 - 406)398 (71 - 468)
definitionCHROMAT_FILE: MSMg01no144_k16.b1 PHD_FILE: MSMg01no144_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:33 2005CHROMAT_FILE: MSMg01no144_k16.g1 PHD_FILE: MSMg01no144_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAACTGGATCCCCACTACTAGACCGTTACTAGTAAGAAACCTAA
GGCACCAAGATCAGGATGCAATGGTAGGATACTACCAGTACAGTTGGGAA
GATGGGGAGCCTGATAGGTGAAATGGCATAGGATACATGAGTGAAAGAGG
GCTGGGGTAAGGGCAAAAGAAGAAAGAATAGGAAAGAAAACAAGAAGGAG
AAAATAGAAAAGATGAGAAATAAAAAAGTTCAAAATTCCTGGGATGTGCA
AAGCCATATCTTGAGTTCTAGTGAAATATCTGATAGTGGTTTCCAGAAAT
GAGGTCCCCCAACTTCTGATATAGTCCATCCCCTGTCTTTATAGACACCT
GAGTAATAATGACAAGATATTCCCATATCAGGACAGCAGTAACAACCAGA
GGGGCAACATCTTGTTATAGCTGTTGACATGAATAATTGAGGAGAGCCAG
AGAGCCTTATAGAAAACATTCGAGTAATGAGGATTATGAGAGTAATCATG
AGATCATTGTCACAATTAAGTTTATAGCACCTGTTGCTGTTGCTGTAAGT
CCTAACAACATGGCATGTGTCTTCCTCACATATGTGTATGCCCGTTGTGT
CTTCCTTCCTTTACCCCCTTTTCTCTTCTCTTCCTCTCTTTTTCCCGTTT
TTTCTCCCTCTTTCTCGCCCTTTCTTTCTCTTCCTCTCTCTTGCACTTTT
TTCATC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAATCTGTGAAAGATGTGGGGGAAGGATT
GAAGGAGTCAGAGAATTCAAGGACATCATAAGAAAACCTGTAAAATAAAC
TAACTTGGGCCCATAGGGGCTGACAGAGTCTGAACTAGTAACCAAAAAGC
ATATTTGGGATAGACGTCAGCTTTCTACTGCTTATAACAGTTGTGTGGCT
GGGTTTCATGTGCAACCCCTAACAGCAGAAGCAGGATCTGTCTCTAGCTC
TGTTGCCTACCTTTGGATCCCTTTCCCCTATCTGGGCTGCCTTATCTAGC
CTCAATAGGAGAAAATGCCCTAAACTTACTTCAACTTGATAGGCCAAGGC
AGGTTGATATCCACAGGAGGCCTCCCCTTGTCTGAGAAGAAAGGGAGGGA
GACTGAGGGGAGGAACTGGGAGGAGAGAAGGGATGGGTGAGTCCCTCTCT
CCTCTCTTCCTTTTTTTTTTTTTCTTCTTTTTCCCCTCCCTTCCTTCTTC
CTTCTCTCTTTTCCTTTTTCCCTCTTTTCCTCTTCTTCTTTTCTTTTTTC
CCCTTTCCCCCCCTTTTCCTTTTCTCTCCTTCTTCCTCACACTCTTCCCA
TTACCTTTTTCCTTTCCCCCTTTTTTCCTTTTTTTTCCCACTTCTTTCCT
TTCCTTCCTTTTCTTCTCGCTTATCTTCTTTTCTCTCCCCATTCCTTTTT
CTTTTTCTTTTTTTCCCCCCACTCTTTCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_k16.b1 MSMg01no144_k16.b1 CHROMAT_FILE:
MSMg01no144_k16.b1 PHD_FILE: MSMg01no144_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:33 2005
         (361 letters)



>mm_chr7_78395279_78396039
          Length = 761

 Score =  646 bits (334), Expect = 0.0
 Identities = 352/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaactggatccccactactagaccgttactagtaagaaacctaaggcaccaa 63
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattcctaactggatcctcactactagaccgttactagtaagatacctaaggcaccaa 263

                                                                       
Query: 64  gatcaggatgcaatggtaggatactaccagtacagttgggaagatggggagcctgatagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatcaggatgcaatggtaggatactaccagtacagttgggaagatggggagcctgatagg 323

                                                                       
Query: 124 tgaaatggcataggatacatgagtgaaagagggctggggtaagggcaaaagaagaaagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaaatggcataggatacatgagtgaaagagggctggggtaagggcaaaagaagaaagaa 383

                                                                       
Query: 184 taggaaagaaaacaagaaggagaaaatagaaaagatgagaaataaaaaagttcaaaattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taggaaagaaaacaagaaggagaaaatagaaaagatgagaaataaaaaagttcaaaattc 443

                                                                       
Query: 244 ctgggatgtgcaaagccatatcttgagttctagtgaaatatctgatagtggtttccagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 ctgggatgtgcaaagccatatcttgagttctagtgaaatatctgagagtggtttccagaa 503

                                                                     
Query: 304 atgaggtcccccaacttctgatatagtccatcccctgtctttatagacacctgagtaa 361
           ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 504 atggggtcccccaacttctgatatagtcaatcccctttctttatagacacctgagtaa 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)