BAC Information

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BAC

Clone NameMSMg01-145M11
Chromosome7 (Build37)
Map Location 150,711,648 - 150,887,376
singlet/doubletdoublet
Overlap geneNap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5
Upstream geneMrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2
Downstream geneMrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd, Tmem16a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145M11.T7 (MSMg01no145_m11.b1)MSMg01-145M11.TJ (MSMg01no145_m11.g1)
ACCAG349491AG349492
length707708
length of high quality
(start - end)
574 (46 - 619)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no145_m11.b1 PHD_FILE: MSMg01no145_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:58 2005CHROMAT_FILE: MSMg01no145_m11.g1 PHD_FILE: MSMg01no145_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,711,648 - 150,712,218)(150,887,046 - 150,887,376)
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCGCGGA
ATTCCACTTTCTCTCTTGCTTTAGGAACACTTTTAGGGAGCTAAGCATGG
TGGCACTTGCCTTTAATCCCAGCACTCAGTAGGCAGAGGCAGGCAGATCT
CTGTGAGTCCCAGAACAGCCTGGTATACAGAACAAGTCCCAGGACAGCCA
GGGCTACCCAGAGAAACCCTATCTCGAAAAAAACAAATAATAATAATAAT
AAAAAAGAGTAGTTTTAGGGAACTTCCTAAGACAGGGTGTCACTATGTAA
CTCTAGCTGTTCTAAAACTTACTATGTAGACACCCGCCTGTCTCTGCCTC
CCAAATGCTAGGATTAAAGGCGTGTGCACTATGCCCATCAAGAAGCCAAC
TCTTAAAGGCAGGGATCCCCCACCTGAGCCCCACACAGCCAGCCTGGTCC
ACCATGTATGTCAGTGTGTACTCTAAAGGAATTTCCTCACACAGGAAACT
TGAGCACTAAGCTCTTACTTGCTAACAGAACATACTTTGTGTTTTGTAGG
TTCAAAGTTAAATCATAGAAAATGGCCATTACAATGACATCACCCAAATG
TCCCATGAGGCACACATGGTGGACAACAGCAGCAAGCTCTAAGACAAAGC
AAAGCCAAGTGCCCAGATCTAGGACTGGACCTGCCTAAGGTTCCCCAAAC
AACTCTA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAGGCAGTACACACACACACACAC
ACACACACACACACACACAACTGTAAGCTACCAGCAAAAAGTAGTCTCCC
CAAAGCAGAATAAGGGAGACAAAACCTCTTCTAGAGGCAGGAACAACCCT
AACTGGGCCCACAGAAGTGGCTCTCTCCTCTTGGTTCCTCCAGTGCATCT
TTGTGCTCCCCACAGGGCATCAAGAAACCCTATAATCCCATTCTGGGGGA
GACTTTTCGCTGCCGCTGGCTGCACCCTCAGACCAACAGTCACACCTTCT
ACATAGCAGAACAGGCAAGACCCCACCGCCCAGCTTGCCTTCCAGCTCAG
TATGTGCAGTGGGTGCCGCCCCGTGGGACTGAGAGTGGGGTTTTCAGTGG
CCTGTACCTGCCATAGGACAGGCTTCACACCTGCTCACCATCCATGGGGA
TTCTCCCAGAAGGGAGGGCAGGCGTGATGGTGCTGTAGGATTTCCTGAAG
GAGGGAGAGCAGCCTGACTGACTTCCCCGTGAAGGGCATCTTTGGATGAT
TCAGACCCCAGGATTCTGGTTCTGCCCTGGAACTTGGACGAATGTGCCCC
TCCCCTCTCCTTTGCCCATGGAACCCAGAAGTCCTTTTTGGGCATCGCCC
TATCCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_m11.b1 MSMg01no145_m11.b1 CHROMAT_FILE:
MSMg01no145_m11.b1 PHD_FILE: MSMg01no145_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:58 2005
         (574 letters)



>mm_chr7_150711445_150712418
          Length = 974

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccactttctctcttgctttaggaacacttttagggagctaagcatggtggcactt 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccactttcactgttgctttaggaacacttttagggagctaagcatggtggcactt 263

                                                                       
Query: 64  gcctttaatcccagcactcagtaggcagaggcaggcagatctctgtgagtcccagaacag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctttaatcccagcactcagtaggcagaggcaggcagatctctgtgagtcccagaacag 323

                                                                       
Query: 124 cctggtatacagaacaagtcccaggacagccagggctacccagagaaaccctatctcgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctggtatacagaacaagtcccaggacagccagggctacccagagaaaccctatctcgaa 383

                                                                       
Query: 184 aaaaacaaataataataataataaaaaagagtagttttagggaacttcctaagacagggt 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 aaaaacaaataataataataataaaaaagagtagttttagggaacttcctaagatagggt 443

                                                                       
Query: 244 gtcactatgtaactctagctgttctaaaacttactatgtagacacccgcctgtctctgcc 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 gtcactatgtaactctagctgttctaaaacttactatgtagacacccgactgtctctgcc 503

                                                                       
Query: 304 tcccaaatgctaggattaaaggcgtgtgcactatgcccatcaagaagccaactcttaaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccaaatgctaggattaaaggcgtgtgcactatgcccatcaagaagccaactcttaaag 563

                                                                       
Query: 364 gcagggatcccccacctgagccccacacagccagcctggtccaccatgtatgtcagtgtg 423
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcagggatcctccacctgagccccacacagccagcctggtccaccatgtatgtcagtgtg 623

                                                                       
Query: 424 tactctaaaggaatttcctcacacaggaaacttgagcactaagctcttacttgctaacag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tactctaaaggaatttcctcacacaggaaacttgagcactaagctcttacttgctaacag 683

                                                                       
Query: 484 aacatactttgtgttttgtaggttcaaagttaaatcatagaaaatggccattacaatgac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aacatactttgtgttttgtaggttcaaagttaaatcatagaaaatggccattacaatgac 743

                                          
Query: 544 atcacccaaatgtcccatgaggcacacatgg 574
           |||||||||||||||||||||||||||||||
Sbjct: 744 atcacccaaatgtcccatgaggcacacatgg 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no145_m11.g1 MSMg01no145_m11.g1 CHROMAT_FILE:
MSMg01no145_m11.g1 PHD_FILE: MSMg01no145_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:58 2005
         (343 letters)



>mm_chr7_150886801_150887543
          Length = 743

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 11  acacacacacacacacacacacacacacacacacaactgtaagctaccagcaaaaagtag 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acacacacacacacacacacacacacacacacacaactgtaagctaccagcaaaaagtag 517

                                                                       
Query: 71  tctccccaaagcagaataagggagacaaaacctcttctagaggcaggaacaaccctaact 130
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcaccccaaagcagaataagggagacaaaacctcttctagaggcaggaacaaccctaact 457

                                                                       
Query: 131 gggcccacagaagtggctctctcctcttggttcctccagtgcatctttgtgctccccaca 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gggcccacagaagtggctctctcctcttggttcctccagtgcatctttgtgctccccaca 397

                                                                       
Query: 191 gggcatcaagaaaccctataatcccattctgggggagacttttcgctgccgctggctgca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gggcatcaagaaaccctataatcccattctgggggagacttttcgctgccgctggctgca 337

                                                                       
Query: 251 ccctcagaccaacagtcacaccttctacatagcagaacaggcaagaccccaccgcccagc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccctcagaccaacagtcacaccttctacatagcagaacaggcaagaccccaccgcccagc 277

                                          
Query: 311 ttgccttccagctcagtatgtgcagtgggtg 341
           |||||||||||||||||||||||||||||||
Sbjct: 276 ttgccttccagctcagtatgtgcagtgggtg 246


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)