Query= MSMg01no146_b01.b1 MSMg01no146_b01.b1 CHROMAT_FILE:
MSMg01no146_b01.b1 PHD_FILE: MSMg01no146_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:24 2005
(938 letters)
>mm_chr7_82677688_82679024
Length = 1337
Score = 1239 bits (641), Expect = 0.0
Identities = 713/758 (94%), Gaps = 35/758 (4%)
Strand = Plus / Minus
Query: 212 caccaagtgagtgtccaacaccaaatgatcagccctgaaaacacattcatacacctaaca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 caccaagtgagtgtccaacaccaaatgatcagccctgaaaacacattcatacacctaaca 1278
Query: 272 ttatacaaactgagcacgctgtatttatatgtttaggaatacacacagacaata--acag 329
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1277 ttatacaaactgagcaagctgtatttatatgtttaggaatacacacagacaataacacag 1218
Query: 330 taatagaaagaggacatgaattctagagagagagagagaaagaggggtttccaacaggag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 taatagaaagaggacatgaattctagagagagagagagaaagaggggtttccaacaggag 1158
Query: 390 gtgttggaaaaagaaaaggtgaaggggagaaatgatgtgacataacctcaaacatacaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 gtgttggaaaaagaaaaggtgaaggggagaaatgatgtgacataacctcaaacatacaaa 1098
Query: 450 aaatttaaaagatta---ccccccccaaggtaaaaagaaaaagaatcgcatactcttaaa 506
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 aaatttaaaagattacccccccccccaaggtaaaaagaaaaagaatcgcatactcttaaa 1038
Query: 507 tgtttggcttggtaatcttattaggacaacagaacagtgggtccttcgcccttgaatata 566
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1037 tgtttggcttggtaatcttattaggacaacagaacagtgggtccttcgtccttgtatata 978
Query: 567 aactgatctgatctcacctaagtcagaggagaccgaagtgacttgattaaaacttcatct 626
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 977 aactgatctgacctcacctaggtcagaggagaccgaagtgacttgattaaaacttcatct 918
Query: 627 gaagttttattcataatagataagttaaggcacatactaactggtaaccccagcagtaca 686
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 917 gaagttttattcataatagataagttaaggcacatactaactggcaaccccagcagtaca 858
Query: 687 gaaatatcacatggtgaaaaacggtcagtaggttaactgccaccatgaattctcacagat 746
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 857 gaaacatcacatggtgaaaaac----agtaggttaactgccaccatgaattctcacagat 802
Query: 747 ttcaaaagcccagcaataaaactggaatctaaacagcataaagttagaggttttcaatgg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcaaaagcccagcaataaaactggaatctaaacagcataaagttagaggttttcaatgg 742
Query: 807 tcaagttttcatgataataaataatctaaacacacttctcaaaataagcatccttataga 866
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaagttttcatgatcataaataaactaaacacacttctcaaaataagcatccttataga 682
Query: 867 actaccacaaatcaagctgtgtgtgtgtgt--------------------------gana 900
|||||||||||||||||||||||||||||| || |
Sbjct: 681 actaccacaaatcaagctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgaga 622
Query: 901 gagagagagagagagagagagagagagagagagagaga 938
||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagagagagagagagagagagagagagagagagagaga 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 938
Length of database: 1337
Length adjustment: 11
Effective length of query: 927
Effective length of database: 1326
Effective search space: 1229202
Effective search space used: 1229202
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_b01.g1 MSMg01no146_b01.g1 CHROMAT_FILE:
MSMg01no146_b01.g1 PHD_FILE: MSMg01no146_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:24 2005
(701 letters)
>mm_chr7_82553938_82555038
Length = 1101
Score = 1108 bits (573), Expect = 0.0
Identities = 602/619 (97%), Gaps = 15/619 (2%)
Strand = Plus / Plus
Query: 5 ttccttccctgcttccctctctctcctctctctttctctctctctctctctctctctctc 64
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 193 ttccttccctgcttccctctctcttctctctctctctctctctctctctctctctctctc 252
Query: 65 tctctct--ct-t---------tctctctctctctctccttgcctccctcacttgctacc 112
||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctctctatctctctctctctctctctctctctctctccttgcctccctcacttgctacc 312
Query: 113 tcccttcctccctttgtgtgagggccctcacacagtgtgtaacgtaagatgtctttgaat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcccttcctccctttgtgtgagggccctcacacagtgtgtaacgtaagatgtctttgaat 372
Query: 173 ttttgatccagcttccacctccccagtgctatgattaaagagatgtaccactgtctgaaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttttgatccagcttccacctccccagtgctatgattaaagagatgtaccactgtctgaaa 432
Query: 233 tggttgttgttgttgttgttgttgttgttgtt---tgtactggctggttttgtgtgtcaa 289
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 433 tggttgttgttgttgttgttgttgttgttgttgtttgtactggctggttttgtgtgtcaa 492
Query: 290 cttgacacaagctggagttatcacagagagaggagcctcccttgaggaaatgcctccatg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttgacacaagctggagttatcacagagagaggagcctcccttgaggaaatgcctccatg 552
Query: 350 agatccagctgtaagtcattttcccaattagtgatcaagagtagagggccctttgtgggt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agatccagctgtaagtcattttcccaattagtgatcaagagtagagggccctttgtgggt 612
Query: 410 ggtgccatccctgggctggtagtcttgggttctataagaaagcaagttgagcaagccagt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggtgccatccctgggctggtagtcttgggttctataagaaagcaagttgagcaagccagt 672
Query: 470 ggaagcaagccagtaagtaacatcccgccatggcctctgcatcagctcctgctttctgac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggaagcaagccagtaagtaacatcccgccatggcctctgcatcagctcctgctttctgac 732
Query: 530 ctgcttgagttccagttctgacttcttttgatgatgaacagcaacgtggaagtgtaagct 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctgcttgagttccagttctgacttcttttgatgatgaacagcaacgtggaagtgtaagct 792
Query: 590 gaataaaccctttcctccc 608
|||||||||||||||||||
Sbjct: 793 gaataaaccctttcctccc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
