BAC Information

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BAC

Clone NameMSMg01-146H07
Chromosome7 (Build37)
Map Location 89,609,114 - 89,689,179
singlet/doubletdoublet
Overlap geneAdamtsl3
Upstream geneAp3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146H07.T7 (MSMg01no146_h07.b1)MSMg01-146H07.TJ (MSMg01no146_h07.g1)
ACCAG349991AG349992
length1,2411,236
length of high quality
(start - end)
709 (88 - 796)763 (88 - 850)
definitionCHROMAT_FILE: MSMg01no146_h07.b1 PHD_FILE: MSMg01no146_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:15 2005CHROMAT_FILE: MSMg01no146_h07.g1 PHD_FILE: MSMg01no146_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,688,470 - 89,689,179)(89,609,114 - 89,609,876)
sequence
CCCTTTTTGTNNNNNGCATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCATCCCTTTTGGGACTACTTTTAAGTTGCATATCTGGCTT
ATCAAGGTCACACCCTTACCTATGGACCACATATCCACCCCTTAGGATGG
AGTCTGAATACCTCCCAAACATGTTGCAGTGCAGGGGGTAAAGCCAGCGT
ATTCCCAGTCGTAAGTCATCTCACTGTCCTTCTCTTGGAGACGGCCACCC
AGTTCTCGAGACACAGGGCTCTGGTCACAGGCTTGACGGAGGCAGGGTCG
GTCAGTGGGTGGCTTGGGGCCTTCGCACTCCTCCTCAGGGAGCTCAGCCT
CCGTCTGTGTGAACGTGAGGAGCACCCGACACCGCACCTCACGAACCTGA
ATGCCATGTCCGCACGTGGTGCTGCAGGCTGACCAGGGCTCTGGGATGAA
CCTGAGGGATACCGGAAGCCAAAAAAAGGGGTCACATGTTGGCTGTAAGA
GGAATTCTATGGTTCTGAGAACTGTTATTTATGTAGTTACCATGTTTTGA
GATCTTACAACCAACAAAGAGACTTTTTCATTAAAGACAGGCTTCTTTTG
CCTCTACACAAAAAGTTTCATGCTAAGACCAGTGTGACACATTCCAGAAT
TTCTTAAGATACAATAATTAACAATCATTTAAAGATAACTATGTGATTTT
TATTTACCAGATGGATATTTTTGCCAATCTTTATTTTGCCAATCTTGGTG
GGCTTTTTGTTTGTAACTGGGAGAGTGTTGAACATTCTCTAGCTTTAACA
GCTAAACTGCAGGATAAGGCAGATGTTTGCAGAGGATGAAGCTGTAATGT
TCTTTCTGTTTAACAAACCTCCTGGGCTTTTGAATGTTCTCAATCATAGG
TAGGAATGCATCTTGGCAGTAAACATTTATTCCTTAATCTTGAATTATTG
GCCCAGTCATAAAGGTTGTTAGAATTGAACCCCTTCAACCAAATCTCATC
CCTTACTGTTCCTGTAAAAGCCCCTCTTCTAAAAAAGGTATTTTTTTTGG
TTTTTCAGAACAGGTTTTCTCTGGTTAACCCGTGTTTGTCCGGAAAACTT
CTCGTAAATCATTCGGTCCCTTAATTTCAAATTTCTCCTGTTCCTTGTCC
TCCCAAGCTTATATTAAAGTTCGGCGTCCCCCGCCTCCCTTTAATTTCTC
TTTAAANTTTATCTTTTTTTGTATTCAAATATTTATATTTG
CGTCTCTTTTNNTAACATGTGAGNCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGTATTTCAATCCTCCTGCA
ATAATTTAACACCTACCCTTTTCCCACCATGACCCCATTGGCTTTTCAAA
CTTTTTGGTGTTGAACCTAATTATGCATACATAGCCTTGTAGCTTTTGCC
ATTTTTGATTACACTGAAAGCAGAAAAAGAAATAGAAGCTTTGTTGAATT
TGTATTCATTTCTTTGTTTTTCTTGAAAAACAAAAAGTTAGAGATCTGGA
CTTTAACATGAAACTTCCAGCTCTTAAAAATTCTTCTGCCACCAAAGTGG
CTTTTGAATATCTGTATTATACTCCCATGTGATATAAGCTAGGTTTTCCT
GCATAAACCAACAACCCTCCCAGGCCAGTGGCTTAAAGTAACATAATGCT
GCCGTCTGCTATTGTCACGTGCCAATGTATGTCATCAGGATTTCTGTTCT
TGGAATGTTGTAGGGACCTAGGCTGAGAGGGGCTTTATCGTAACGTATAC
TTGTTCGCTTAACCACAGTAGATAGAGAGACCATGAAACTCTCCTGTTGA
CACTTAAGCCTTCTTAACAGAACTGACACAGGTCAGTTGGGCTCATATTT
CCCTGGTCAAAGACAGTGACAATGGGTCACTTCTAATGAAACTGAGGAAC
TGAAGTCCTTGTGTGGACTGAAAGGATTGAAGTGCTTTACAGTGTCTGTC
TCCAAAGACCAGCACAACCTGCCTGCTTTTCTTCAGCTTTTTATAATCTT
AAAAAAATTCATACATTTTTTATCATAATTCCCCTCCCTTGCCCTTCCCA
GATCCTTCTCACCTCCTTACCCAACCCATATTCATGTTCTTTCTCCTCTC
TTCCTTCAAATGAAAACCAAATAAACCCAGAAGACTAATAAAGAATGAAA
CCTAAGGTTCACCCCAAACATAGTTCACTTTGTGTTGCCCAACTGAAGGC
TGCCCTGAAAGGGCTGTTGAAATCGGCCGGGACACTCCCCTGTGAAAAAA
GGAATTACCCTTCCCCTGCAAGAATCCTTTTCCGAATACATTTTGTTTAA
GGGGGGAAATTTTTTCCTCTTTTCTCTTTCCCCTTTTGTATATTTTTCCC
TATTTAAACCCTCCTTTATAATACAACTATGTTTCCTCTCNTCTCTCAAT
ATTTCTTATTTCTACTCTCCTCTCTTTCTTCTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_h07.b1 MSMg01no146_h07.b1 CHROMAT_FILE:
MSMg01no146_h07.b1 PHD_FILE: MSMg01no146_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:15 2005
         (709 letters)



>mm_chr7_89688270_89689379
          Length = 1110

 Score = 1236 bits (639), Expect = 0.0
 Identities = 693/711 (97%), Gaps = 3/711 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatatctggcttatcaaggtcacacccttacctatggaccacatatccaccccttagga 60
           ||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||
Sbjct: 910 gcatatctggcttatcaaggtcacacccttagcaatggaccacatatctatcccttagga 851

                                                                       
Query: 61  tggagtctgaatacctcccaaacatgttgcagtgcagggggtaaagccagcgtattccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 850 tggagtctgaatacctcccaaacatgttgcagtgcagggggtaaagccagcgtactccca 791

                                                                       
Query: 121 gtcgtaagtcatctcactgtccttctcttggagacggccacccagttctcgagacacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gtcgtaagtcatctcactgtccttctcttggagacggccacccagttctcgagacacagg 731

                                                                       
Query: 181 gctctggtcacaggcttgacggaggcagggtcggtcagtgggtggcttggggccttcgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 730 gctctggtcacaggcttgacggaggcagggtcggtcagtgggtggcttggggccttcaca 671

                                                                       
Query: 241 ctcctcctcagggagctcagcctccgtctgtgtgaacgtgaggagcacccgacaccgcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctcctcctcagggagctcagcctccgtctgtgtgaacgtgaggagcacccgacaccgcac 611

                                                                       
Query: 301 ctcacgaacctgaatgccatgtccgcacgtggtgctgcaggctgaccagggctctgggat 360
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctcacgaacctgaatgccaggcccgcacgtggtgctgcaggctgaccagggctctgggat 551

                                                                       
Query: 361 gaacctgagggataccggaagccaaaaaaaggggtcacatgttggctgtaagaggaattc 420
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 550 gaacctgagggataccggaagccaaaaaaaggggtcacatgtgggccgtaagaggaattc 491

                                                                       
Query: 421 tatggttctgagaactgttatttatgtagttaccatgttttgagatcttacaaccaacaa 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tatggttctgagaactgttttttatgtagttaccatgttttgagatcttacaaccaacaa 431

                                                                       
Query: 481 agagactttttcattaaagacaggcttcttttgcctctacacaaaaagtttcatgctaag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 agagactttttcattaaagacaggcttcttttgcctctacacaaaaagttccatgctaag 371

                                                                       
Query: 541 accagtgtgacacattccagaatttcttaagatacaataattaa-caatcatttaaagat 599
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 370 accagtgtgacacattccagaatttcttaagatacaataaataaacaatcatttaaagat 311

                                                                       
Query: 600 aactatgtgatttttatttaccagatggatatttttgccaatctttattttgccaatctt 659
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 310 aactatgtgatttttatttaccagatggatatttttgccaatctttattcagccaatctt 251

                                                              
Query: 660 ggtgggctttttgtttgtaactggg-agagtgttgaacattctctagcttt 709
           |||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 250 ggtgggctttttgtttgtaa-tggggagagtgttgaacattctctagcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1110
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1100
Effective search space:   768900
Effective search space used:   768900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no146_h07.g1 MSMg01no146_h07.g1 CHROMAT_FILE:
MSMg01no146_h07.g1 PHD_FILE: MSMg01no146_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:15 2005
         (763 letters)



>mm_chr7_89608914_89610076
          Length = 1163

 Score = 1398 bits (723), Expect = 0.0
 Identities = 753/763 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatcctcctgcaataatttaacacctacccttttcccaccatgaccccattggcttttc 60
           ||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||
Sbjct: 201 caatcctcctgcaataatttaacacctacacttttcccaccatgatttcattggcttttc 260

                                                                       
Query: 61  aaactttttggtgttgaacctaattatgcatacatagccttgtagcttttgccatttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactttttggtgttgaacctaattatgcatacatagccttgtagcttttgccatttttg 320

                                                                       
Query: 121 attacactgaaagcagaaaaagaaatagaagctttgttgaatttgtattcatttctttgt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 attacactgaaagcagaaaaagaaatagaagctttgttgagtttgtattcatttctttgt 380

                                                                       
Query: 181 ttttcttgaaaaacaaaaagttagagatctggactttaacatgaaacttccagctcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcttgaaaaacaaaaagttagagatctggactttaacatgaaacttccagctcttaa 440

                                                                       
Query: 241 aaattcttctgccaccaaagtggcttttgaatatctgtattatactcccatgtgatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattcttctgccaccaaagtggcttttgaatatctgtattatactcccatgtgatataa 500

                                                                       
Query: 301 gctaggttttcctgcataaaccaacaaccctcccaggccagtggcttaaagtaacataat 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaggttttcctgcagaaaccaacaaccctcccaggccagtggcttaaagtaacataat 560

                                                                       
Query: 361 gctgccgtctgctattgtcacgtgccaatgtatgtcatcaggatttctgttcttggaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgccgtctgctattgtcacgtgccaatgtatgtcatcaggatttctgttcttggaatg 620

                                                                       
Query: 421 ttgtagggacctaggctgagaggggctttatcgtaacgtatacttgttcgcttaaccaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtagggacctaggctgagaggggctttatcgtaacgtatacttgttcgcttaaccaca 680

                                                                       
Query: 481 gtagatagagagaccatgaaactctcctgttgacacttaagccttcttaacagaactgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagatagagagaccatgaaactctcctgttgacacttaagccttcttaacagaactgac 740

                                                                       
Query: 541 acaggtcagttgggctcatatttccctggtcaaagacagtgacaatgggtcacttctaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggtcagttgggctcatatttccctggtcaaagacagtgacaatgggtcacttctaat 800

                                                                       
Query: 601 gaaactgaggaactgaagtccttgtgtggactgaaaggattgaagtgctttacagtgtct 660
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 801 gaaactgaggaactgaagtccttgtgtggactgagaggattgaagtgctttagagtgtct 860

                                                                       
Query: 661 gtctccaaagaccagcacaacctgcctgcttttcttcagctttttataatcttaaaaaaa 720
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtctccaaagaccagcacaacttgcctgcttttcttcagctttttataatcttaaaaaaa 920

                                                      
Query: 721 ttcatacattttttatcataattcccctcccttgcccttccca 763
           |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 921 ttcatacattttttatcatatttcccctcccttgcccttccca 963


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1163
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1153
Effective search space:   868209
Effective search space used:   868209
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)