BAC Information

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BAC

Clone NameMSMg01-146I01
Chromosome7 (Build37)
Map Location 80,209,088 - 80,209,347
singlet/doubletsinglet
Overlap genenone
Upstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570, LOC100042029, EG384643
Downstream geneLOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146I01.T7 (MSMg01no146_i01.b1)MSMg01-146I01.TJ (MSMg01no146_i01.g1)
ACCAG350024AG350025
length1,2031,117
length of high quality
(start - end)
278 (126 - 403)---
definitionCHROMAT_FILE: MSMg01no146_i01.b1 PHD_FILE: MSMg01no146_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:21 2005CHROMAT_FILE: MSMg01no146_i01.g1 PHD_FILE: MSMg01no146_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTAGNTAATTCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTAGTTCCTGAATTCGTTTAAGGGGNTTTGTTGCCGAA
TAAAACTGATCTCTGACCTTGTTACTGGCCACTACCCCCCCTTAGGTGAA
GTAGAAAGATGGTCTAGTCTACAGAAAACTAAGTATGTGAATCTGAATTT
ACTAAAAATCAAATTCTGGAGCCAAACTATTCTGTCTATCACTTCTGTTA
TCTTGGGTCCTGCACTTGTTTCTGGAAAATTCCATCCAGATGATATTTTT
CATATATATATTCTAATGCATTTTAATGTGTCTGGGTGTTTTGCCTCCGT
GCATGTCTGTGGCACCACAAACATTTCTAGTGCCTATGGAGGCCAGAAGA
ATAATTTTTGCCCTGTAGAACTGGAGTGGTAGATAGTTACGAGCTGCCGC
AGGGGTGCTGGGACTCAAATCCAGCTTCTCTGACAAAGAGCAGTCAGTGC
TCCTAACGGCTAAGCAGTCTCTCCAGTCCCTCCAAGTGATTTTTATACAC
ATTGAAAACCAAAACTAATGTTATGATGCTTGGTGTTCTTGAGGGTTTGA
TTGGCCACAGAACACCCTGGTTTGAGGTTATTTCCAGGTATGTCTGTGGC
CATACGAGATTTGAATTTGAATCAGTGAACTGGGTAAGGACAATCCAGCT
TCCTCCAGTATTGGACAGTCTCATCCAATCCATTATGTGACTGATTAGGA
GATAATACAAAAATGTACCAATTCTTGTTTGCTTGCTTCCTTGTGGGGAC
TTAGAGTAAGGATGATCTCTAATGTAACTACTTCCCTAGTGTGATTAGGG
TTTCCTGTATATGTATCTATTATGTGGAAATGCTTCTTAAATCTTTTTAT
TTCTTTCCATGTCTCATTGGTATCTTATATTTCAATCTTGAATCTTGCAT
TTTTAGTTATTATGTCAATCCCTTCATTTTCCCTTTTGGATTTGGGGGTC
ATTTTGGTATTATTATGTTACTTTCTTTGATTTCGCTTTATAGTTTAGCC
TCTCTTTTTACCTTTTTCCATTTGTGGATAATTTTTTGCTTATGGTCTTT
TTTTAAATTCATTTATTTTTATATTCTTCCTGGTTCTCCTTGGCTACTTT
AAATTTATATTGTCCTCTTATTTTAATATCTCTATTTATTCTATTCATTN
TTG
AGGTCGCTCAGGGCCCGCNGAAAGANNGNAGGNNNNGANNGNNNNCCTTG
TAGGCGCCCNGNNNGGNAGNNNANNGANNGGNNNNNNAGAANNNAGGAGA
GAGAAAGNGGGAAAAGCCCTCTCCAAAAGNGCNNCGNCANNAGNNGGGGA
GAGAANGGGGAGGGNGGGNNGGNNNNGNNAGAAAGGNNGANAAGNAANNA
AAAAAAAGAAAAAGGGGAAAGAAANNNAGAAAAGAGAAAGGGAGGAGAAA
AGGAAGGANAAGTTTTTTTAAAAGGGGAAAAGGAAAANANGGGAAAAGGA
AGGGAAGAAAAAAGAAAAGAAAGAGAAAGAAAAGTGTTCTTAAGAAAAGA
AGNGAAGAAAAGGGGGGAGAGAAAAAAAACCCCCCCCANAGAAGACAGAA
GGAAAAAAAAAGGAAGAAAAGAAAAAAAAAGAGGANAGAAGGAGAAAAAA
AAGGAAAGAGAGAGGAGAAGAGAAAGAGAGAGGAGAGAGGGGAAAAGAGG
AAAAGAAAAGAAAAGGAAAAAAAAAGAGAAAAAGAGAAGAAAGAGAGAAG
AAGAGAAAAGAAGAAGAAAAAAAGAAAAAAAAGAAAAGGGGAAAAAAAAA
AAAAGGAAGAAAGGAAAAAGGGGAAAAGAAAAAAAAAAGAGAAAAGAAAA
AGAAAAAAAAAAAAAAAAAAAAAAGAAAGGGAAAAGGAAAAAAAAGAGAA
GAAAAATTTTTTTTTTTTTTAGGAAAAGAAAAAAAGAAAAAAAAAATGGT
GAAATAATGGAAAAAATAAAAGAAAAGAAGATAGAAAAATTTTTTTTTTT
TTTTTTTATGAAAAGAGAAAAAGATGGAGAATATATATTTTTATTTAATG
TAGAAGAAGAGAATATTAGAAGGTAAAAATTGATGAGAGAGTTAATATTG
AAATATATAATAATATTATAAAAATGGGTAGAATAAAAAAAAATATATGA
AAAAAAAAGTAGAATTAAAAATATAANAGATAAGAGAAAAGTTAGGATAA
AAATGTAAAAAAATAAAAAAAAATATTAGGAAAGAATTAAGAAATGAAAA
AATAAAAAAAAAGAAATATAATTAAAATAAGATGAAAGAAATATAAATAA
TAAAAATGAGATTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_i01.b1 MSMg01no146_i01.b1 CHROMAT_FILE:
MSMg01no146_i01.b1 PHD_FILE: MSMg01no146_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:21 2005
         (278 letters)



>mm_chr7_80208874_80209547
          Length = 674

 Score =  476 bits (246), Expect = e-139
 Identities = 258/264 (97%), Gaps = 4/264 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  ccttaggtgaagtagaaagatggtctagtctacagaaaactaagtatgtgaatctgaatt 74
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ccttacgtgaagtagaaagatggtctagtctacagaaaactaagtatgtgaatctgaatt 274

                                                                       
Query: 75  tactaaaaatcaaattctggagccaaactattctgtctatcacttctgttatcttgggtc 134
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 275 tactaaaaatcaaattctggagccaaactattct----atcacttctgttatcttgggtc 330

                                                                       
Query: 135 ctgcacttgtttctggaaaattccatccagatgatatttttcatatatatattctaatgc 194
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 331 ctgcacttgtttctggaaaattccatccaggtgatatttttcatatatatattctaatgc 390

                                                                       
Query: 195 attttaatgtgtctgggtgttttgcctccgtgcatgtctgtggcaccacaaacatttcta 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attttaatgtgtctgggtgttttgcctccgtgcatgtctgtggcaccacaaacatttcta 450

                                   
Query: 255 gtgcctatggaggccagaagaata 278
           ||||||||||||||||||||||||
Sbjct: 451 gtgcctatggaggccagaagaata 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 674
Length adjustment: 9
Effective length of query: 269
Effective length of database: 665
Effective search space:   178885
Effective search space used:   178885
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)