Query= MSMg01no146_j09.b1 MSMg01no146_j09.b1 CHROMAT_FILE:
MSMg01no146_j09.b1 PHD_FILE: MSMg01no146_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:31 2005
(264 letters)
>mm_chr7_150007135_150007794
Length = 660
Score = 416 bits (215), Expect = e-121
Identities = 251/265 (94%), Gaps = 6/265 (2%)
Strand = Plus / Plus
Query: 1 tatgttttcat-ttgttcgaagccttgagcatgatctcactggagcctaaggccttcctc 59
||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tatgttttcatatt-ttcaaagcctttcgcatgatctcactggagcctaaggccttcctc 259
Query: 60 gggttctaattgggacctaatacctgcttctccctggggcttaagccccttttttttttt 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 260 gggttctaattgggacctaatacctgcttctccctggggcttaagccc----tttttttc 315
Query: 120 cagtttagactgggcctaaaggcctccctcacattcttaatggctagaaagccatctaca 179
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 316 cagtttagactgggcctaaaggcctccctcacattctcaatggctagaaagtcatctaca 375
Query: 180 aagtcccattgaggcccaaccctagttcccactgtgccctaaaatcttcttaaaagtttg 239
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 376 aagtcccattgaggcccatccctaattcccactgtgccctaaaatcttcttaaaagtttg 435
Query: 240 ctctaaattcattcctcagagtctc 264
|||||||||||||||||||||||||
Sbjct: 436 ctctaaattcattcctcagagtctc 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 660
Length adjustment: 9
Effective length of query: 255
Effective length of database: 651
Effective search space: 166005
Effective search space used: 166005
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_j09.g1 MSMg01no146_j09.g1 CHROMAT_FILE:
MSMg01no146_j09.g1 PHD_FILE: MSMg01no146_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:32 2005
(576 letters)
>mm_chr7_150155450_150156426
Length = 977
Score = 1023 bits (529), Expect = 0.0
Identities = 565/581 (97%), Gaps = 9/581 (1%)
Strand = Plus / Minus
Query: 1 cttcttggcatcttgggtttctatggcccctgaggatttgaactccccc----cctcaca 56
|||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct: 872 cttcttggcatcttgggtttctatgggttctgaggatttgaact----caggtcctcaca 817
Query: 57 cttgcacagcaagtgctttacttaacaatctccccagatcaactggattgctccaaacag 116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 816 cttgcacagcaagtgctttacttaacaatctccccagaccaactggattgctccaaacag 757
Query: 117 cagagaagtgactagacttatccaagtgctcttagcagacacccgggaaatttcgactca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cagagaagtgactagacttatccaagtgctcttagcagacacccgggaaatttcgactca 697
Query: 177 ctgcccacttcccacagcaaggttatcaaaaggctggattaggatgatacagccttgatg 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 696 ctgcccacttcccacagcaaggttatcaaaaggctggattaggatgatacagccttgacg 637
Query: 237 aatcctggagagtcatggaacctgcaggcagccccacactggcagtacatgctccaaggc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatcctggagagtcatggaacctgcaggcagccccacactggcagtacatgctccaaggc 577
Query: 297 agtgcgaaagcagagagaatcctgtttttggtagcc-tcccccagtcggatatttacaaa 355
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 576 agtgcgaaagcagagagaagcctggttttggtagccctcccccagtcggatatttacaaa 517
Query: 356 gaaagtaactccaggttactacccacaggatagaccacttgaaccctataggtcttgctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaaagtaactccaggttactacccacaggatagaccacttgaaccctataggtcttgctt 457
Query: 416 ggctcccaagcacctacctagtcctttgagggaaaaattgggcttgctacggccttgaga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggctcccaagcacctacctagtcctttgagggaaaaattgggcttgctacggccttgaga 397
Query: 476 gcacacttctgggacaatggggcaaaactgagactttgacaaggtcagtgcatttccctt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcacacttctgggacaatggggcaaaactgagactttgacaaggtcagtgcatttccctt 337
Query: 536 ccccttcaaccttccctccaccggcctcaggggaaggatgg 576
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccccttcaaccttccctccaccggcctcaggggaaggatgg 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
