BAC Information

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BAC

Clone NameMSMg01-147D10
Chromosome7 (Build37)
Map Location 47,214,868 - 47,362,078
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147D10.T7 (MSMg01no147_d10.b1)MSMg01-147D10.TJ (MSMg01no147_d10.g1)
ACCAG350546AG350547
length731783
length of high quality
(start - end)
567 (52 - 618)316 (83 - 398)
definitionCHROMAT_FILE: MSMg01no147_d10.b1 PHD_FILE: MSMg01no147_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:44 2005CHROMAT_FILE: MSMg01no147_d10.g1 PHD_FILE: MSMg01no147_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,361,522 - 47,362,078)(47,214,868 - 47,215,183)
sequence
CCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGAGTAGATGCTCAGTGACCAAATGAGACCCAGAAAAC
CCTGAATTAGGGAATCATAAGAAAAGGAAGAGTTCTAACATAGCATGCTT
AGGGGGAAGGAAAATATACTCCAACGAAGGGAGTAGACATAAGGGAGCAT
GACAGTCACTGTGACTCTGCAGCCATACAGTATGACACCAAGACTCCACA
GAAGGACAGACGGAACATGAAGACAGTGTAGGAAGGAAAAGAGGCTCTTT
GTTTCAAGATTAGCTTTGCCTTCCTTGCTGACAGACACCTGTGATAAAGC
TGACATTGCCTATGGAGATTAAAGACAATAATCTCTAATTGCCTAGGTCT
ACTCCTCGTTAATTTTAGCCCTACTCCGCATTATTTCTTTTGATCTGCTA
ATTTTGTGTTTAGCTTATTGCTTCTTTTCTAAGACTTTGGGGTATATTAC
TAGGCTATTTGGCATCTCTCTTGAGTTTTTAATACAGCTATTAATAACTA
AGCTCTTCATCTTTAAAGCTCCTCACTATACTCCACAAATCCTTCTGTGT
TTTATTTTTGTTTTCAAATGTTTAAAAAATGTTATAATTCTACCGTGCCT
GATTTCTTCAATGAATCGTCGATTATACTAAAATACATTAGTGTTCAACC
TCCATGTATTCTTAGTTTTTATACAATCATC
NCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGAAAGAGCTAAATTC
CCAGAAACAGCTTCTGGATCCAGTTGCCCCTATGATCTTAGCCACAAGGT
CCGATCCCATGTGTTGTTGGTTAGCAGCCAGTTAGGACTGAAACCCCATG
GGTGCTCTAATTGGCTGACCTCAATCTAGGCCAGGTTATCAGGGAAGCCA
TCTAAGGTATCTGACAAGCAGCAACCCACTTAGGATGCCAGGTGTGGAAA
AATGGTTGGAAATATACAGAATCCATTTACCTGATTGGTTGCCCCTACTG
TTGACCTTACTGCTCATGGTTTGTGGGGTTTGTTGATGTTGGTTTTGGGT
TTGTTCCTTTTTTTATCACCCCCCCCCCCTTTTCTATTTTTTCTCCCCCT
ATCTCTCTTCCCCCCCGCTCTTCTCCTATTTTATTTTAAAAACCATGCAT
ACTCTTTTCCTCCTTTCCTCTTCACTCCCTTTTTTTTCTCTTCTTTTTCC
CCTCCTCATTTTTTCCTTCCCCTCTCCCTCTTTTTCCATATCCTTTCTCT
TTCTCTCCCCCTTTATACTTGTTCTTCCCCTTCTCACTCAATCCCCGTAC
ACCTTTTTTTTTTTTGCCCCCCCTTCATACTCTTCCCCCCCTCTCCTCTT
ACCTTTTTCTCTTTCCCCCCTTTTTATATTACTCTTCCACTTCATCATCT
GCCTTGTATCTATCCGTTTCCCCTCTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_d10.b1 MSMg01no147_d10.b1 CHROMAT_FILE:
MSMg01no147_d10.b1 PHD_FILE: MSMg01no147_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:44 2005
         (567 letters)



>mm_chr7_47361522_47362488
          Length = 967

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaagagtagatgctcagtgaccaaatgagacccagaaaaccctgaattagggaa 63
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 ggaattcaagagtagatgatcagtgaccaaatgagacccagaaaaccctgaactagggaa 498

                                                                       
Query: 64  tcataagaaaaggaagagttctaacatagcatgcttagggggaaggaaaatatactccaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcataagaaaaggaagagttctaacatagcatgcttagggggaaggaaaatatactccaa 438

                                                                       
Query: 124 cgaagggagtagacataagggagcatgacagtcactgtgactctgcagccatacagtatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cgaagggagtagacataagggagcatgacagtcactgtgactctgcagccatacagtatg 378

                                                                       
Query: 184 acaccaagactccacagaaggacagacggaacatgaagacagtgtaggaaggaaaagagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaccaagactccacagaaggacagacggaacatgaagacagtgtaggaaggaaaagagg 318

                                                                       
Query: 244 ctctttgtttcaagattagctttgccttccttgctgacagacacctgtgataaagctgac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctctttgtttcaagattagctttgccttccttgctgacagacacctgtgataaagctgac 258

                                                                       
Query: 304 attgcctatggagattaaagacaataatctctaattgcctaggtctactcctcgttaatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attgcctatggagattaaagacaataatctctaattgcctaggtctactcctcgttaatt 198

                                                                       
Query: 364 ttagccctactccgcattatttcttttgatctgctaattttgtgtttagcttattgcttc 423
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttagccctactctgcattatttcttttgatctgctaattttgtgtttagcttattgcttc 138

                                                                       
Query: 424 ttttctaagactttggggtatattactaggctatttggcatctctcttgagtttttaata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 137 ttttctaagactttggggtatattactaggctatttggcatctctcttgagtttttagta 78

                                                                       
Query: 484 cagctattaataactaagctcttcatctttaaagctcctcactatactccacaaatcctt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  cagctattaataactaagctcttcatctttaaagctcctcactatactccacaaatcctt 18

                            
Query: 544 ctgtgttttatttttgt 560
           |||||||||||||||||
Sbjct: 17  ctgtgttttatttttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no147_d10.g1 MSMg01no147_d10.g1 CHROMAT_FILE:
MSMg01no147_d10.g1 PHD_FILE: MSMg01no147_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:45 2005
         (316 letters)



>mm_chr7_47214668_47215383
          Length = 716

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagaaagagctaaattcccagaaacagcttctggatccagttgcccctatgatcttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaaagagctaaattcccagaaacagcttctggatccagttgcccctatgatcttagc 260

                                                                       
Query: 61  cacaaggtccgatcccatgtgttgttggttagcagccagttaggactgaaaccccatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaggtccgatcccatgtgttgttggttagcagccagttaggactgaaaccccatggg 320

                                                                       
Query: 121 tgctctaattggctgacctcaatctaggccaggttatcagggaagccatctaaggtatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctctaattggctgacctcaatctaggccaggttatcagggaagccatctaaggtatct 380

                                                                       
Query: 181 gacaagcagcaacccacttaggatgccaggtgtggaaaaatggttggaaatatacagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaagcagcaacccacttaggatgccaggtgtggaaaaatggttggaaatatacagaat 440

                                                                       
Query: 241 ccatttacctgattggttgcccctactgttgaccttactgctcatggtttgtggggtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttacctgattggttgcccctactgttgaccttactgctcatggtttgtggggtttg 500

                           
Query: 301 ttgatgttggttttgg 316
           ||||||||||||||||
Sbjct: 501 ttgatgttggttttgg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)