Query= MSMg01no147_e16.b1 MSMg01no147_e16.b1 CHROMAT_FILE:
MSMg01no147_e16.b1 PHD_FILE: MSMg01no147_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:51 2005
(279 letters)
>mm_chr7_144303950_144304630
Length = 681
Score = 466 bits (241), Expect = e-136
Identities = 257/263 (97%), Gaps = 3/263 (1%)
Strand = Plus / Plus
Query: 1 gggttctggtgggacggcttttgctttaccccatttagaggaaaggactcaaatattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggttctggtgggacggcttttgctttaccccatttagaggaaaggactcaaatattaaa 260
Query: 61 aattcaatttaaaaatcatcctgaaatgtgaaagaaataaatttaaattaatct--gagt 118
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 261 aattcgatttaaaaatcatcctgaaacgtgaaagaaataaatttaaattaatctaagagt 320
Query: 119 ataaatagggacacaacaaaattttcctcttaggaaataggctctttaaaataaactaac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaatagggacacaacaaaattttcctcttaggaaataggctctttaaaataaactaac 380
Query: 179 atctttaaggctaagcctacacgattaaactggattgaggactggttggttgattgattg 238
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttaaggctaagcctacacaattaaactggattgaggactggttggttgattgattg 440
Query: 239 attgattgattgattgattgatt 261
||||||||||||||| |||||||
Sbjct: 441 attgattgattgatt-attgatt 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 681
Length adjustment: 9
Effective length of query: 270
Effective length of database: 672
Effective search space: 181440
Effective search space used: 181440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no147_e16.g1 MSMg01no147_e16.g1 CHROMAT_FILE:
MSMg01no147_e16.g1 PHD_FILE: MSMg01no147_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:51 2005
(498 letters)
>mm_chr7_144460477_144461376
Length = 900
Score = 909 bits (470), Expect = 0.0
Identities = 492/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Minus
Query: 1 agtcttcctcgccgtggcgcatcagagtgagaagtttaaaatccacaatttattcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 agtcttcctcgccgtggcgcatcagagtgagaagtttaaaatccacaatttattcaaata 641
Query: 61 ttgatatttctacttgtcagaagagaggggccttgaaatttccactgagcactgttgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttgatatttctacttgtcagaagagaggggccttgaaatttccactgagcactgttgtca 581
Query: 121 gaagaattgcaagaaatgtgtcagataattcataaacggagttcactactgtgaaatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaagaattgcaagaaatgtgtcagataattcataaacggagttcactactgtgaaatcag 521
Query: 181 ctgggaacagggaaaaatatattcttgtcgatgtagaataggggcaatataacagaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctgggaacagggaaaaatatattcttgtcgatgtagaataggggcaatataacagaaaac 461
Query: 241 agcacccgcttttccatcatgtcaagcaaatgctcaatttgggccaggta--tttttttt 298
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 460 agcacccgcttttccatcatgtcaagcaaatgctcaatttgggccaggtatttttttttt 401
Query: 299 ttttttaaacagcccgctgcttctagagaagccgagaatacccgaccaatgttttgagtt 358
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 400 ttttttaaacagcccgctgcttctagagaagccgagaatacatgagcaatgttttgagtt 341
Query: 359 ctgcttcatagacaagagatctgtttgttgttttttcccctcggagaccttggtttccca 418
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 340 ctgcttcatagacaagagatctgtttgttgttttttcccctttgagaccttggtttccca 281
Query: 419 tcctgcaggagccaatcataaggcagctgctggagcctgggctgaggagggggctctgca 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcctgcaggagccaatcagaaggcagctgctggagcctgggctgaggagggggctctgca 221
Query: 479 tatggtttgcattaaggcac 498
||||||||||||||||||||
Sbjct: 220 tatggtttgcattaaggcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 900
Length adjustment: 10
Effective length of query: 488
Effective length of database: 890
Effective search space: 434320
Effective search space used: 434320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
