BAC Information

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BAC

Clone NameMSMg01-147K03
Chromosome7 (Build37)
Map Location 89,720,541 - 89,720,901
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneWhdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147K03.T7 (MSMg01no147_k03.b1)MSMg01-147K03.TJ (MSMg01no147_k03.g1)
ACCAG350857AG350858
length726698
length of high quality
(start - end)
34 (129 - 162)366 (73 - 438)
definitionCHROMAT_FILE: MSMg01no147_k03.b1 PHD_FILE: MSMg01no147_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:16 2005CHROMAT_FILE: MSMg01no147_k03.g1 PHD_FILE: MSMg01no147_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTCCCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTCACAGA
GGATCCGCGGAATTCTAACTTATTAAAAAGGATTCCCCAGGTCATCAACA
CTTGTGTGATTACTGTTAGCATGAGGATGCCCCCGGGTGTCAGGTTTCAT
TTGCTTTGTCACAGATACAATTTTGAACTAGCTTGGTGAAGACATGTTTG
GTACACGTGGAGGCACAGCCAGCAAACACAGAGGTTTGGACAAGGCTGCA
TCTCTTCCTGGAGATTTATATGCAGTTAATAGTTGCTACCAGTGGGTGTG
GCGTGTCTGGGGACACAAAATTACACATGAATGTAGAATGACAATTGGGA
ACAACAAGGTGGTCAGTGGGATAGGGACCGGCCAGAGTAATACGCTGAAT
ATAATCCGAACATCATATACCTTATGAAAATATGTTAATACAGCCCATTA
TTACATATAAATAAATACTTTATTAAAGAACACAGTGCGTTTGCGACTAA
AACGGGTCCATGCATTCCCCCTGAAACAGTCCCCGACGGCCCAGAACTTA
CTGATGTTCCCTATACAGACCCTTGACCCTCCCTGTCCATATAACACGTC
TTCCGAGCTCCTCCTCGCCTTCAATACACCCTGCAAAGTTTACTCCCCAC
ATGGCTCCCCCCACGCGCCCACCCACCTCCCCCACTCCCCCACGGCCCTA
ACTCCCTCTCCCGCACACCCCCCTGA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAGTCCCTCATCACTACCGACAGTGAT
GGATTGAAGGACTCAGTGAGCACAGTAGGGGACCAATAAATAAACAGATA
CTGGCTATTTACTCATCACAATGCTCTTGTTGATACCCCCAGACGTTCTC
ATTTATGGGGTGCACTTAAGGCATCATGGTTTTACGAAGCTCTTTAGCTC
ACTAAAAAGCTCAACTAGCTTGAGGACAGCCATCCTGGAGTACCACTGGA
TTAACCAACATGGGAGAAAAGGGCGCTCTTGGCCCAGTTTCTTCTATTCA
GTGACAGTTGATGAGCTGCTACTAGTTAGGCAGGAAGGGGATAAAAAAGA
GCATCATATTGTCTGTGAGCATCCTGCTCAAGTCACTGCCACAGTCACCA
TCTTTTCCTAAGATGGTGGAGGAAGCACTTCTATCTGGTCTTACCATCAT
GAACCATTGTACTTTATTTAAGTCATACTTGTGTGTAAGCAGGTTTCTCA
GAAACATGGCCAATGGATAGCTTTGAAACTCAGTCTTCTAGAATAATGCC
GAGTTATAACACTGGAATCCTTGTAATGATCCCCAGTACCGAAGAATATT
TTTTACCGGACCGTAGAAGCCCTCTCCATTAAAAGTGAATATTTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_k03.g1 MSMg01no147_k03.g1 CHROMAT_FILE:
MSMg01no147_k03.g1 PHD_FILE: MSMg01no147_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:16 2005
         (366 letters)



>mm_chr7_89720136_89720901
          Length = 766

 Score =  654 bits (338), Expect = 0.0
 Identities = 356/362 (98%), Gaps = 2/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ccctcatcactaccgacagtgatggattgaaggactcagtgagcacagtaggggaccaat 65
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 766 ccctcatcactaccgacagtgatggattgaaggacaaagtgagcacagtaggggaccaat 707

                                                                       
Query: 66  aaataaacagatactggctatttactcatcacaatgctcttgttgatacccccagacgtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 706 aaataaacagatactggctatttactcatcacaatgctcttgttgatacccccagacatt 647

                                                                       
Query: 126 ctcatttatggggtgcacttaaggcatcatggttttacgaagctctttagctcactaaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctcatttatggggtgcacttaaggcatcatggttttacgaagctctttagctcactaaaa 587

                                                                       
Query: 186 agctcaactagcttgaggacagccatcctggagtaccactggatt-aaccaacatgggag 244
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 586 agctcaactagcttgaggacagccatcctggagtaccactgg-ttaaaccaacatgggag 528

                                                                       
Query: 245 aaaagggcgctcttggcccagtttcttctattcagtgacagttgatgagctgctactagt 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaaagggtgctcttggcccagtttcttctattcagtgacagttgatgagctgctactagt 468

                                                                       
Query: 305 taggcaggaaggggataaaaaagagcatcatattgtctgtgagcatcctgctcaagtcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 taggcaggaaggggataaaaaagagcatcatattgtctgtgagcatcctgctcaagtcac 408

             
Query: 365 tg 366
           ||
Sbjct: 407 tg 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)