Query= MSMg01no147_l12.b1 MSMg01no147_l12.b1 CHROMAT_FILE:
MSMg01no147_l12.b1 PHD_FILE: MSMg01no147_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:23 2005
(618 letters)
>mm_chr7_111010142_111011159
Length = 1018
Score = 1050 bits (543), Expect = 0.0
Identities = 594/611 (97%)
Strand = Plus / Plus
Query: 8 ttcaagcccatttccagttaaactaagccatcagtggtcagcgttttagttggatataga 67
|||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 208 ttcaaggcaatttctagttaaactaagccatcaatggtcagcgttttagttggatataga 267
Query: 68 gtgaaggaggtcacatctttagtctaagacctcatgaggcagggacaggcagatctctgt 127
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 268 gtgaaggaggtcacaactttagtctaagacctcacgaggcagggacaggcagatctctgt 327
Query: 128 gagtaccagtcaatcctgatctacatagtatgttccatgatagcatagttatatagtaaa 187
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gagtaccagtcaatcgtgatctacatagtatgttccatgatagcatagttatatagtaaa 387
Query: 188 atcctgactcaaaatgaaggaagaaaagaaagaagtaaggaaaggaggaaggaaagaaag 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcctgactcaaaatgaaggaagaaaagaaagaagtaaggaaaggaggaaggaaagaaag 447
Query: 248 aagaaaagaaaaaagaaaggaaaagggcagggactgcttatcctagaaatattacctact 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagaaaagaaaaaagaaaggaaaagggcagggactgcttatcctagaaatattacctact 507
Query: 308 tcctctgtaagcttgagcaatttgcttggcttcttcaagttgtaaaatacagaataataa 367
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 508 tcctctgtaagcttgagcaatttgcttggcttcttcaagttgtaaaacacagaataataa 567
Query: 368 tatagcttgcgttttaagcaagagccacaggcaagagaagaggataggattactaaaact 427
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 568 tatagcttgtgttttaagcaagagccacaggcaagggaagaggataggattacaaaaact 627
Query: 428 ttaaaattacccttgaacccaagtatggttctaggcctttctagttgtgtggccttgagg 487
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 628 ttaaaattacccttgaacccaagtatggttctaggcctttctatttgtgtggccttgagg 687
Query: 488 aatctacttctcccctcaaaatttctatctcacatttcacaaaatggagaaagtgaggat 547
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 688 aatctacttctcccctcaaaatttctatctcacattttacaaaatggagaaagtgaggat 747
Query: 548 tagggtttgattgctggacatctctcccagggtgtatttgaatacttaatccacaggtgg 607
|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 748 tagggtttgaatgctggatgtctctcccaggctgtatttgaatacttaatccacaggtgg 807
Query: 608 ctttacaattt 618
|||||||||||
Sbjct: 808 ctttacaattt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_l12.g1 MSMg01no147_l12.g1 CHROMAT_FILE:
MSMg01no147_l12.g1 PHD_FILE: MSMg01no147_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:23 2005
(604 letters)
>mm_chr7_111203095_111204103
Length = 1009
Score = 826 bits (427), Expect = 0.0
Identities = 512/547 (93%), Gaps = 20/547 (3%)
Strand = Plus / Minus
Query: 3 gtgtatgtgtgtacgtgtgaatttcatcatgaattcatcagttgacagttatgagttatg 62
|||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 gtgtgtgtgtgt--gtgtgaatttcatcatgacttcatcagttgacagttatgagttatg 478
Query: 63 caggctagttctattttc-----attgtgggtaaagcagtatagatgctgaacccaaatc 117
|| ||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||
Sbjct: 477 caagctagttctattttcattgtattgtgggtaaagcagcatagatgctgaacacaagtc 418
Query: 118 ctagagattatgtg-gtgtttcctgaggaccttcaggcagccttgtggatgtgagtcacc 176
|||| ||||||| | | |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 417 ctagggattatgagag-gtttcctgaggaccatcaggcagcctcgtggatgtgagtcacc 359
Query: 177 agtttgtgtttggatccctgtga--acagtttgatgttactcacttgtctaagtgatgtt 234
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 358 agtttgtgtttggatctctgtgaacacagtttgatgttactcacttgtctaagtgatgtt 299
Query: 235 gaactgacacttgtttcctctttgattttaaataggagataaaaggggtgcacaggtcat 294
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 298 gaactgacaattgtttcctctttgattttaaataggagat-aaaggggtgcacaggtca- 241
Query: 295 tttttttgtggtttccctatttccatttggtagtggaaaaacaaacaaacaaacaaacta 354
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 240 tttttttgtggtttccctatttccatttggtagtggaa----aaacaaacaaacaaacta 185
Query: 355 gtgtacttccgatgatgacattagaaagacactgttcagactgctttactttctagttga 414
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtgtacttccgatgatgacatttgaaagacactgttcagactgctttactttctagttga 125
Query: 415 caattttggttttgagttctggtggttttattcctttgacacaatgtactttgtaatatt 474
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caattatggttttgagttctggtggttttattcctttgacacaatgtactttgtaatatt 65
Query: 475 atttaatgttgtaggaaaaacaagatgtgatttctagtgcaccagttcaattcagtaagt 534
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 64 atttaatgttataggaaaaa-aa--tgtgatttctagtgcaccagttcaattcagtaagt 8
Query: 535 aaaacag 541
|||||||
Sbjct: 7 aaaacag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1009
Length adjustment: 10
Effective length of query: 594
Effective length of database: 999
Effective search space: 593406
Effective search space used: 593406
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
