BAC Information

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BAC

Clone NameMSMg01-147M12
Chromosome7 (Build37)
Map Location 75,189,084 - 75,345,538
singlet/doubletdoublet
Overlap geneIgf1r
Upstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771
Downstream geneC330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147M12.T7 (MSMg01no147_m12.b1)MSMg01-147M12.TJ (MSMg01no147_m12.g1)
ACCAG350969AG350970
length720706
length of high quality
(start - end)
224 (75 - 298)528 (66 - 593)
definitionCHROMAT_FILE: MSMg01no147_m12.b1 PHD_FILE: MSMg01no147_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:28 2005CHROMAT_FILE: MSMg01no147_m12.g1 PHD_FILE: MSMg01no147_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,345,315 - 75,345,538)(75,189,084 - 75,189,611)
sequence
TTCTXXXXXXXXXXXXXXXXXXXXXXXXCCATACCAAGCGGATCCGCGGA
ATTCTGCCATATTCACGAACTCAGTCTGTGGACAGGTGGATTAACATGGA
TGTACGGTGGGCATAGGGGGAAGAAGAGATGGGGGAGCGAGGGTTGCTTC
CCCTAGGGAAACGGCTTCCCGTGCAGAGAAATGTCTTGCAGAGGGTATTG
AATGATGAAGGGGTTTGGTTCCAGCTAAGTGGTTTCCGCCCCATTCTTCA
GATTGAGAGGAGTCAGTGGTCAGCAATTAAGCCTATGAACTGCAGCAGTG
ACCAGGATATTGAGATGTTCCTCATTATGTAACACTGGCACCTTGATCTG
GGGACGACCGATGGCTGTCTAAGAGCACTGAACGCCTGAGTACTGGGAGG
AAATTCTTGCCCCACCCCTGTAAACCTAGATGACTCTCTGTAACCGACCG
TGTCGTGGACACTAGAGAAGAACCTGCTACCTAGCACTTTTCTGAAGCAG
TGAGCTTCTACCCCCAGATAACTAGCTCTCAGGCCTTGCCTGAATAGCCC
CTTTCTGCAGCAGACGGATTGGATTACCGATTATCATGACTGCCCCCAAT
GCACGTAACCCCTGTTCTTGGGGTACCCATGCCCCCCCTGATGATTCACC
CTACTCCCACCCCCCCTACCTCTTGTTCCTGGCCTACCGTCATCCATGCC
CGTGTCCCCACCCCTCCCAN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGTGGTAACCAAGCCATGGTGAATTAATGTTCCTC
ACAGATGGTTTTATTTCCTTGTGTAATATTATTTGGATCACAAAGCACAT
AGCTTGGAAAACGTGAGCAGGAGGCCTTTCTGCTGTAGAGAAGTGATAAC
ATCAGGATCGCCGGATGTTTTGTTTCTTCTTGTTCTCCAGTTTGTCTTTC
TTAAAAGGATGTAGTTGCTGGGCACTGCTTGGCCCCTTTCACTTTTGGAA
CAATCTCTGTTTGATACTGCAATGTTTCTGTCATTTTTAAGAACCTTTCA
TTTCTTACGAAAGCCTTGACTTTCCTTTGATAGGAATTCAAAGCCATTTA
CCCCGCCCAACTTAATTCCTTTACCTATCTCTGTTGATGGTTTTCTACTT
CATATTTCGTTCTTAATTAATAATGTTATCAGCACATTACATTGGATGAG
TATCAGGACGTGGAGGTGGACATGGAGGTGACTGTGTGTGGACATTTTTT
TTCTTTCCCTTAAAGAAAAAAAGACGTAGCATGAGCTCCCTTGTGGTTCC
TGTTCCACTCTATTCCTGTCCCGGGGGCTTTGGACATAGAGGTCTCCTTT
AGTGCCTCCTGCGCCCTTTCTCATTCTTCAAGTCTTGAGTCATCTCCAGG
ATGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_m12.b1 MSMg01no147_m12.b1 CHROMAT_FILE:
MSMg01no147_m12.b1 PHD_FILE: MSMg01no147_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:28 2005
         (224 letters)



>mm_chr7_75345115_75345738
          Length = 624

 Score =  402 bits (208), Expect = e-117
 Identities = 220/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtggacaggtggattaacatggatgtacggtgggcatagggggaagaagagatgggg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 424 tctgtggacaggtggattaacatggatgtacgctgggcatagggggaagaagagatgggg 365

                                                                       
Query: 61  gagcgagggttgcttcccctagggaaacggcttcccgtgcagagaaatgtcttgcagagg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 364 gagcgagggttgcttcccctagggaaacggcttcccgtgcagaggaatgtcttgcagagt 305

                                                                       
Query: 121 gtattgaatgatgaaggggtttggttccagctaagtggtttccgccccattcttcagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtattgaatgatgaaggggtttggttccagctaagtggtttccgccccattcttcagatt 245

                                                       
Query: 181 gagaggagtcagtggtcagcaattaagcctatgaactgcagcag 224
           ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 gagaggagtcagtggtcagcagttaagcctatgaactgcagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no147_m12.g1 MSMg01no147_m12.g1 CHROMAT_FILE:
MSMg01no147_m12.g1 PHD_FILE: MSMg01no147_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:28 2005
         (528 letters)



>mm_chr7_75188884_75189811
          Length = 928

 Score =  944 bits (488), Expect = 0.0
 Identities = 518/528 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtggtaaccaagccatggtgaattaatgttcctcacagatggttttatttccttgtgta 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 cgtggtagccaagccatggtgaattaatgttcctcacagatggttttatttccttgtata 260

                                                                       
Query: 61  atattatttggatcacaaagcacatagcttggaaaacgtgagcaggaggcctttctgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattatttggatcacaaagcacatagcttggaaaacgtgagcaggaggcctttctgctg 320

                                                                       
Query: 121 tagagaagtgataacatcaggatcgccggatgttttgtttcttcttgttctccagtttgt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagagaagtgataacgtcaggatcgccggatgttttgtttcttcttgttctccagtttgt 380

                                                                       
Query: 181 ctttcttaaaaggatgtagttgctgggcactgcttggcccctttcacttttggaacaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcttaaaaggatgtagttgctgggcactgcttggcccctttcacttttggaacaatc 440

                                                                       
Query: 241 tctgtttgatactgcaatgtttctgtcatttttaagaacctttcatttcttacgaaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtttgatactgcaatgtttctgtcatttttaagaacctttcatttcttacgaaagcc 500

                                                                       
Query: 301 ttgactttcctttgataggaattcaaagccatttaccccgcccaacttaattcctttacc 360
           ||||||||||||||||||||||||||||||||||||   |   ||||||| |||||||||
Sbjct: 501 ttgactttcctttgataggaattcaaagccatttacagtgtataacttaactcctttacc 560

                                                                       
Query: 361 tatctctgttgatggttttctacttcatatttcgttcttaattaataatgttatcagcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctctgttgatggttttctacttcatatttcgttcttaattaataatgttatcagcac 620

                                                                       
Query: 421 attacattggatgagtatcaggacgtggaggtggacatggaggtgactgtgtgtggacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attacattggatgagtatcaggacgtggaggtggacatggaggtgactgtgtgtggacat 680

                                                           
Query: 481 tttttttctttcccttaaagaaaaaaagacgtagcatgagctcccttg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttttttctttcccttaaagaaaaaaagacgtagcatgagctcccttg 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)