Query= MSMg01no147_o15.b1 MSMg01no147_o15.b1 CHROMAT_FILE:
MSMg01no147_o15.b1 PHD_FILE: MSMg01no147_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:38 2005
(246 letters)
>mm_chr7_56550350_56550995
Length = 646
Score = 433 bits (224), Expect = e-126
Identities = 239/244 (97%), Gaps = 2/244 (0%)
Strand = Plus / Minus
Query: 2 gttgatgctcgg-aattgattgttttcccatacagggtcttgttagggagccctggctga 60
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gttgatgct-ggtaattgattgttttcccatacagggtcttgttagggagccctggctga 527
Query: 61 cctggtaatttactattgaagtgcaggctatccttctgccttgcattcgtgaatgccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cctggtaatttactattgaagtgcaggctatccttctgccttgcattcgtgaatgccaga 467
Query: 121 atcatatagacatgccccaccagaaccagaggacaggacggtgggcagatgaaactgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atcatatagacatgccccaccagaaccagaggacaggacggtgggcagatgaaactgcag 407
Query: 181 atggcaggtctgtgggtaaggcacagctactctgcttttcaaatatatttgaccttagga 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaggcaggtctgtgggtaaggcacagctactctgcttttcaaatatatttgaccttagga 347
Query: 241 ctct 244
||||
Sbjct: 346 ctct 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no147_o15.g1 MSMg01no147_o15.g1 CHROMAT_FILE:
MSMg01no147_o15.g1 PHD_FILE: MSMg01no147_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:38 2005
(439 letters)
>mm_chr7_56386968_56387806
Length = 839
Score = 795 bits (411), Expect = 0.0
Identities = 432/439 (98%)
Strand = Plus / Plus
Query: 1 tcagcctgagtccccaaatactgtcccggtgaaaactcagagcaaggcctgctagtgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcctgagtccccaaatactgtcccggtgaaaactcagagcaaggcctgctagtgtgt 260
Query: 61 tcaacctacacagaggagacactgattggcgtctggggacatcagagagcagaaagtgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacctacacagaggagacactgattggcgtctggggacatcagagagcagaaagtgag 320
Query: 121 atgctagatacccaagatgctgtgaactcttagggatcagggagggagagaagagggaga 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctagatacccaagatgctgcgaactcttagggatcagggagggagagaagagggaga 380
Query: 181 agattgcagaagcagaccagggagaggaaaagaaagaagagaaggaaacacacagtgtga 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 381 agattgcagaagcagaccagggagaggaaaataaagaagagaaggaaacacacagtctga 440
Query: 241 gcagagagaagcaacctgtacaatcccacagtctggtcagagtcccttcctgctcgccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagagagaagcaacctgtacaatcccacagtctggtcagagtcccttcctgctcgccat 500
Query: 301 cacttctgaggtcccctcctctcacctgatatatctctgagctgccagaagaccaacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttctgaggtcccctcctctcacctgatatatctctgagctgccagaagaccaacaca 560
Query: 361 gtccggcagaatttaggcacagagggaccctcctatgccagagtcaattacccacctgtc 420
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctggcagaatttaagcacagagggaccctcctatgccagagtcaattacccacctgtc 620
Query: 421 cctctgtacatttgggccc 439
||||| | |||||||||||
Sbjct: 621 cctctctgcatttgggccc 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
