BAC Information

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BAC

Clone NameMSMg01-148C01
Chromosome7 (Build37)
Map Location 130,555,884 - 130,556,314
singlet/doubletsinglet
Overlap geneLcmt1
Upstream genePrkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17
Downstream geneAqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148C01.T7 (MSMg01no148_c01.b1)MSMg01-148C01.TJ (MSMg01no148_c01.g1)
ACCAG351218AG351219
length1,054719
length of high quality
(start - end)
---431 (76 - 506)
definitionCHROMAT_FILE: MSMg01no148_c01.b1 PHD_FILE: MSMg01no148_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:55 2005CHROMAT_FILE: MSMg01no148_c01.g1 PHD_FILE: MSMg01no148_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCGGGGCGCGGAACAGACCGCAAAATATGTACGCCCGACTCTTCTCG
CGAAATGTGAGGGGCGAGAAAACATAGAAAGGCACCGCCGCCCCCGTAAT
GATGCCAGACGGCAGCGCATAAGCGATAGCTGGTAAAGAAAAATACGGTG
GAGGTATAATAATTGGATTGGCGGGCGGGCCGGAAGCGGGGGAGCGGTGT
GAAATAGTTAGAACACCTCTGCTTTTTTGTCTTCGTCGCACCCCCAGTGT
ATATTCGCGCCCTCTCTGACACGTTATGCACCACTAATTCGAATATACTG
TCGGAGGAAAGTGAGGGACCGGTCATCCCAAAGAAAAATAAAGTGCAAAG
GGAGGGCGGGAGGTGTAGGGCGGGGTTTCGTTGTCGCGGAAAAAAAAAAA
AAAGAATTCGTTTCGGAAATGAAGACGCTCGCGGCATGCGGGCTCGCTCG
AAATGTGTAAAATATTTAACCCTCACGTCCTTACGCGACCGTCTAATATA
CATATTATTCTGTTGCCACCTGTGTTATTATCACCGCTTGTGTTTCATTG
ATTTAGAGACGACGTTTGTAGACGGCGATATATCGAATAGTTTTTGCCGC
CCAAGTAGCAGTTCTAGTGAAAATATCCACAAGGTGGGAGTAGGTAAGAG
GAAACAGGAACGGGGTGAAAAATTGTATCTGTGTTTGGCTCGAGATTAAT
GAGGGGAATAACGTCTACCAATGATGAGGAGGGAAATTCGATGATTAAGT
ATCGTGTTGTCGTTGTTTTCCACGCTCGGATGTCCTAATAAACCCATTGT
AATTAATAGGACATAACTATTGTTTCTCCCCGTTTCTAAGCGTCTATTAA
CACACCGATACTTCTCACTCGCGCGCGGATGAATCGTGAATAGCGATGTG
ATAGAGGGTAGGTTCACGTAGCCTGTTAAATACGTTTAGTGGGAGGAAAA
ATTACTTAACCCACGGAAATATTAGGATAGACGGCGAACCCATGTGTGCG
GNCTATAGGTACGGGCATTTAGTTTGTTCATTTGCGCGGGTGGCATGGTC
GCTA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCAACAGGGCCTACCAGTCTTG
AATGGAAGCCTCTAACAAACACTGTGTGCTGAAGTAGCCTTTTCTGTATG
AGCTGGCTCTCGTGTGTTACAGAGTGGAGAGAGAACACAGTTGGGGAAGT
CTGAGGGCATGCCTGGGTCTTCCACTCCATGGATCTCCAATTATAGCATG
TAGCATAGTCTCCTTTGGCTGAATATAACATATTGATTCAAGGACACTGG
TTTCCTTAGGCTTGTGCTTAGAGAGCATGTTAGTGAGAGTCACAGGGAAT
GGAATCGGATGTCCTACCTGAGCATAGTGCCAACCTTTTAATGAACTAGC
TATTTGACAATGGTCCTTCACCACATATTTTTTAATTTATTTGGCCCTTA
GTTCTTTTCTACATTGTGAAATGGGATAAATACTGTATCATCAAATGGAT
TTGAAGATTTGATGAAGAAATGCATGTGAGGGTGGGAGAACAGAAAGAAG
TGTGCACTGGTTACTTATGGAGTAAGCCACGCCTCAGTCTGACTTCTGCT
CTAGGTACCTGTGGCTTCTGCAGTGGTGGTACTGAGCACGGAATCCCCAG
CTCGTGAGCGAGCTGACAACGGGGATATTGGCCCCCCTTTTGGACTCTAT
TACCAATGGTGAATAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_c01.g1 MSMg01no148_c01.g1 CHROMAT_FILE:
MSMg01no148_c01.g1 PHD_FILE: MSMg01no148_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:56 2005
         (431 letters)



>mm_chr7_130555684_130556514
          Length = 831

 Score =  772 bits (399), Expect = 0.0
 Identities = 423/431 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcaacagggcctaccagtcttgaatggaagcctctaacaaacactgtgtgctgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcaacagggcctaccagtcttgaatggaagcctctaacaaacactgtgtgctgaagt 260

                                                                       
Query: 61  agccttttctgtatgagctggctctcgtgtgttacagagtggagagagaacacagttggg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 agccttttctgtatgagctggctctcgtgtgttacagagtggagagagaacacagtcggg 320

                                                                       
Query: 121 gaagtctgagggcatgcctgggtcttccactccatggatctccaattatagcatgtagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtctgagggcatgcctgggtcttccactccatggatctccaattatagcatgtagca 380

                                                                       
Query: 181 tagtctcctttggctgaatataacatattgattcaaggacactggtttccttaggcttgt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtctcctttggctgaatataacgtattgattcaaggacactggtttccttaggcttgt 440

                                                                       
Query: 241 gcttagagagcatgttagtgagagtcacagggaatggaatcggatgtcctacctgagcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttagagagcatgttagtgagagtcacagggaatggaatcggatgtcctacctgagcat 500

                                                                       
Query: 301 agtgccaaccttttaatgaactagctatttgacaatggtccttcaccacatattttttaa 360
           ||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||
Sbjct: 501 agtgccaaccttttaatgaactagctatttgacaatggtcctttaaaatatattttttaa 560

                                                                       
Query: 361 tttatttggcccttagttcttttctacattgtgaaatgggataaatactgtatcatcaaa 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tttatttggtccttagttcttttctacattgtgaaatgggataaatactgtatcaccaaa 620

                      
Query: 421 tggatttgaag 431
           |||||||||||
Sbjct: 621 tggatttgaag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)