BAC Information

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BAC

Clone NameMSMg01-148D05
Chromosome7 (Build37)
Map Location 27,056,920 - 27,057,522
singlet/doubletsinglet
Overlap genenone
Upstream geneCic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968
Downstream geneCyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148D05.T7 (MSMg01no148_d05.b1)MSMg01-148D05.TJ (MSMg01no148_d05.g1)
ACCAG351271AG351272
length715711
length of high quality
(start - end)		603 (73 - 675)620 (73 - 692)
definitionCHROMAT_FILE: MSMg01no148_d05.b1 PHD_FILE: MSMg01no148_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:01 2005CHROMAT_FILE: MSMg01no148_d05.g1 PHD_FILE: MSMg01no148_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAACCGCG
GAATTCATTACTATATTCCATAGGTAGGGAAAGAGTGGGCAGCCTTGTCT
AGTCTCTGATTTTAGTGGGATTGCTTCAATTTTCTCTCCATTTAGTTTGA
TGTTGGTTACTGGTTTGCTGTATATTGCTATTACTATGTTTAGGTATGGG
CCTTGAATTCCTGATCTTTCCAAGACTTTTATAATGAAAGGGTCTTCCAT
TTTGTCAAATGTTTAATGGTGAACAGTGGAGGGGAAATAAAATGTGGAGT
ATAAATAATTTTTTTAAAAAGAGGGAACAAAATACACTGTATCTACCACC
ACATCAAACCAGATAAATTCAATCCTCAACCAAGAGGTACATCACATGGT
TGAAAATGGATAGACAGGAAGCACCCAGCATTCCCATTAAGCCAGGTACA
CCTGAAAGCTATTGAAAAAGCCTGCAGCTGTCACTGTTGCTGACCACAGT
TTGGGAAGTTGTAGATAAATCCAAGTTATTGCTTGCAATTTGTTCTGCTC
TCCATCGCAGTCCCTTTATAGATATACCCAAAGATGAGATAGCTAGATCA
CATGTGAGTACTAATTTAAATTTTTTGTGTAGTATCCAGATCATTTTTAG
AAATGCTGTACCATGCCTACTTGTAATGCGCACGGTTCAGATTTCCCCAC
ATCTTCAGCAATATT

CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGGGAGCATGGACTTTTCTATACGTT
GAACCTCAAGCTGCTGTTGCACTAACCATTCTAGTACCTTTAAATTTTCC
TTTGTCATAGACCATTGTTCAATCCACCTTAGTGGTAAGACTGTTGGTGT
CTTATCAGCTTTGCTTCTGACGAGAAGTTGAAGTGTCAGCCTCTGCTGTA
CCTCTTTTCTGGACAGCAAGGACAGTCTGTAAATGTTTTTGATAACGTTC
TTTAATTAATTTCATTTTTAAAAAAATTAGAAGCACCAGTTGTTTTGTGA
CTTGTCTCTGAAATTGGAATTAATTTGTGTTTTCTATTGTTGTAACAGAT
CTCTTTCCCATAAGTTTATGGCTATATCAGCCACATTTGGCCTTGATTTT
TTTTATCTGACCTTTAGACCCTGTACATTTAAAACATCTAATCCTTTGTT
TCATCTGGAATAAAGTTTTAACTCCTTGAAATGGGATATTTACCTCTTGA
AGTGTCCAGTCTAGAGGCCAAGATTGTAGAGAAATAATGGTGATATCTGC
TCCAGTGTCAACCATCCCTTCAATTTCAATATTATTTATAAATACCTTTG
GTTTTGGCCTCTGATCATATATAAAAGTTTGCCCAAATACTCAGTTTTTG
GCACCTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_d05.b1 MSMg01no148_d05.b1 CHROMAT_FILE:
MSMg01no148_d05.b1 PHD_FILE: MSMg01no148_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:01 2005
         (603 letters)



>mm_chr7_27056590_27057592
          Length = 1003

 Score = 1143 bits (591), Expect = 0.0
 Identities = 600/603 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtagggaaagagtgggcagccttgtctagtctctgattttagtgggattgcttcaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ggtagggaaagagtgggcagccttgtctagtctctgattttagtgggattgcttcaattt 874

                                                                       
Query: 61  tctctccatttagtttgatgttggttactggtttgctgtatattgctattactatgttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tctctccatttagtttgatgttggttactggtttgctgtatattgctattactatgttta 814

                                                                       
Query: 121 ggtatgggccttgaattcctgatctttccaagacttttataatgaaagggtcttccattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ggtatgggccttgaattcctgatctttccaagacttttataatgaaagggtcttccattt 754

                                                                       
Query: 181 tgtcaaatgtttaatggtgaacagtggaggggaaataaaatgtggagtataaataatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgtcaaatgtttaatggtgaacagtggaggggaaataaaatgtggagtataaataatttt 694

                                                                       
Query: 241 tttaaaaagagggaacaaaatacactgtatctaccaccacatcaaaccagataaattcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tttaaaaagagggaacaaaatacactgtatctaccaccacatcaaaccagataaattcaa 634

                                                                       
Query: 301 tcctcaaccaagaggtacatcacatggttgaaaatggatagacaggaagcacccagcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcctcaaccaagaggtacatcacatggttgaaaatggatagacaggaagcacccagcatt 574

                                                                       
Query: 361 cccattaagccaggtacacctgaaagctattgaaaaagcctgcagctgtcactgttgctg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccaattaagccaggtacacctgaaagctattgaaaaagcctgcagctgtcactgttgctg 514

                                                                       
Query: 421 accacagtttgggaagttgtagataaatccaagttattgcttgcaatttgttctgctctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 accacagtttgggaagttgtagataaatccaagttattgcttgcaatttgttctgctctc 454

                                                                       
Query: 481 catcgcagtccctttatagatatacccaaagatgagatagctagatcacatgtgagtact 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 453 catcgcagtccctttatagatatacccaaagatgagatagctaaatcacatgtgagtact 394

                                                                       
Query: 541 aatttaaattttttgtgtagtatccagatcatttttagaaatgctgtaccatgcctactt 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatttaaaatttttgtgtagtatccagatcatttttagaaatgctgtaccatgcctactt 334

              
Query: 601 gta 603
           |||
Sbjct: 333 gta 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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