BAC Information

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BAC

Clone NameMSMg01-148F06
Chromosome7 (Build37)
Map Location 78,980,294 - 78,980,628
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665535
Downstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148F06.T7 (MSMg01no148_f06.b1)MSMg01-148F06.TJ (MSMg01no148_f06.g1)
ACCAG351354AG351355
length707703
length of high quality
(start - end)
335 (72 - 406)332 (72 - 403)
definitionCHROMAT_FILE: MSMg01no148_f06.b1 PHD_FILE: MSMg01no148_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:11 2005CHROMAT_FILE: MSMg01no148_f06.g1 PHD_FILE: MSMg01no148_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGG
AATTCATGCCAAGTTTATCAAGAAAACTTTTCAAAGAGATTTGTTGAAGT
TCTATCATGAGGCCCTACAAACAATTCCTGTCTCCTTCCTGTATCCTGTT
ATAAATCAAAAATCATAATCTATATTTTACCTACCACACACATTATTATT
CTCCTGTGTGATATTCTCAACGTCTTCACTTGATTACTTTCAAAGACTTG
TCAGCTTATTATGAAGTCTTATCTGTTTTGTTTTGTATTGTTTTGCTGCC
TTGGTTTGGTGGCGCTTTTCCTTGTTGATAATCAGATGACCTTTCTAGCC
AAGAGTCACCTCCCTCTTAATACCCAGGAGCTGATGGAAATCTTAACGAG
GTTCCTCTTTTTCATAACACCCCCCCCCCTAATGTTTTTAGGTTGTTTTT
AATATTCCAGTGCAAATCACTAAAGCAGTAATAGCAATAACAATTACATA
TTTAACAATTTTGACATGTTTGACTTAATGAATGTCTGCCTTTTGATCAA
TTTTGCCCAGCAGTCTCATTGTTTGACACAGTCAACCATATTTATGCCAC
ATACCCCCATTCTTAGAGTATTAACAACATTACATACATTTCTCGGAATA
TTAATACCGACAATTTACTGTTACTAACAATATAATTAATCTGCAAGTTT
TTTAATC
CTCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATACTGCTGACAAAGACACATGGGAAATC
ATGTGCACACAAAGATATTCATGAAACAATAATTTGATAGTAAAGGTTTA
TTAAATTTCAAAATGTCCATGAACAAAGGAAGATAAATGATAATTCTGTC
TTACAATTGAATACAATGCAGAAAAGGGAGAAAAAAAGAGAAGAATTATT
CTTTATAAAGTATATGAAAGACATCCAAGAGATATTATTAAATAAAAAAA
GAGTAGAGAAATGTATAGAAAATTCTATTGCTTCTGTTTTTAAGGATCTT
ATAGATGCAGAGCTATATTCGGAGACTAGTATGATCTTTAAACACCATCC
AGTAGAAGTAGTTAGCATCCCCCCCCAAATGAAGTAGACAGCGATGAACT
GAATGAGAGATCTTCTGTTCAACATTGTATTCCTGAAATAATTCAGATAC
CTGTTCCCTAAGAACATTTGCCCAGCAACAGAGTAGGTCGGTAGAGGCTA
CCACAACCTCAAAACGCAGATGAATATTTTCCCTTACCTAAGTCATATGG
TAACAAATTGAAAATAACAGTATGAACAAGTAGCCCATTATGTGCCCCCG
TTGTTGTAAACGCCTCCGAATTAACCCCCCCGCCTACAATATCCCCCCGT
ACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_f06.b1 MSMg01no148_f06.b1 CHROMAT_FILE:
MSMg01no148_f06.b1 PHD_FILE: MSMg01no148_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:11 2005
         (335 letters)



>mm_chr7_78980094_78980828
          Length = 735

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaacttttcaaagagatttgttgaagttctatcatgaggccctacaaacaattcctgt 60
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gaaagcttttcaaagagatttgttgaagttctatcatgaggccctacaaacaatccctgt 260

                                                                       
Query: 61  ctccttcctgtatcctgttataaatcaaaaatcataatctatattttacctaccacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccttcctgtatcctgttataaatcaaaaatcataatctatattttacctaccacacac 320

                                                                       
Query: 121 attattattctcctgtgtgatattctcaacgtcttcacttgattactttcaaagacttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attattattctcctgtgtgatattctcaacgtcttcacttgattactttcaaagacttgt 380

                                                                       
Query: 181 cagcttattatgaagtcttatctgttttgttttgtattgttttgctgccttggtttggtg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 cagcttattatgaagtcttatctgttttgttttgttttgttttgctgccttggtttggtg 440

                                                                       
Query: 241 gcgcttttccttgttgataatcagatgacctttctagccaagagtcacctccctcttaat 300
           | |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcttttccttgtcgagaatcagatgacctttctagccaagagtcacctccctcttaat 500

                                              
Query: 301 acccaggagctgatggaaatcttaacgaggttcct 335
           ||||||||| |||||||||||||||||||||||||
Sbjct: 501 acccaggaggtgatggaaatcttaacgaggttcct 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)