BAC Information

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BAC

Clone NameMSMg01-148G05
Chromosome7 (Build37)
Map Location 146,923,547 - 146,923,825
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253
Downstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148G05.T7 (MSMg01no148_g05.b1)MSMg01-148G05.TJ (MSMg01no148_g05.g1)
ACCAG351396AG351397
length822727
length of high quality
(start - end)
126 (71 - 196)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no148_g05.b1 PHD_FILE: MSMg01no148_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:16 2005CHROMAT_FILE: MSMg01no148_g05.g1 PHD_FILE: MSMg01no148_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCAAGGGCATCTCCAGCTGCACAGACTTTGAAGCCAGCCTGGGTTACG
TGAGATTGTACCTTAAAGAAACAAACAAAAAGGGATGGGGGTTTGAGAAC
ATGGGGGTGGCTAGGTTGTTCAGTGTAAAAGTGTTTACCATGCATACTAG
GAACTGAATTCGGATCCCCAGTATCCTTGGGTTTGTTTGTTTGCTTGTTT
GTTTGTTCGCTTGTTTGTTCGCCCTTTTCCCCATCTTTCCTTTACTCATC
CTCTTCTTCCTCTCTCTTTTTTTTTTCCCTCCTCTTTCCTCCTCTTTATT
TTTTTTCTTTTACTTTTTTTCTCCCTCTTTTTCTTTTTTTCCCCTTCTTT
TTTTACCTTTTTCCTTTCTTTTCCCCCCCCCCTTTTCCCTTTACATCTTC
TCATACCTTTATTTTTATCCCATCCTATTCTCTTTTTCCCTTTTTTTTTT
TTTCCTCTCCTTTTTTTTCTTATTTTTCTTTTCCATTTTTTTTTTTTCAA
ATTTCTCCATTTTCTCCTTTTTTCCTTTTTCTTCCCTTCCCTTTCCCTAT
ACCCGCTTTTTTTAATTCTCCCTTTTACTCTTCTCCCCCTTTATTCCCCC
TTCTTTCTCCTCCTTTCTTTCCCTTCCCCTCTTTCTCCCTTTTTACCTTC
TCTATTTATCTCTTCTCCTACCCCTTATTCATTTTCTTTTTCTCTTTTTA
TCCCCCAATCTTTACTTCTCCCTTCCCCCATCTCCTTTAACACCTATTTT
TTTTTACCTCTCCTCCCTCCTG
CGAAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACATGAAAGGACAGTTAAGAAA
CAGATGCCACCGGCTGCTTCAAGACTGAGCATTAAACAGAAACCGTGCTC
CAATGCAGCGTGTCAGCATCAAGTGCTCATCAAGCAAGGAGCGCACTCAC
ACATGTGAGGACAGGCCATCACCATGGCTGCTGGACTCCCAGAAGGCGAG
CGAGCTGTTGTGTGGCTAGCGGCTCTGCTTCCTGCCACACTCCAAAGAGC
TTGCCTTAGCTCAAAGAAAAGCCTGCTTGCACATGTTCATCTATCAAGGA
AAGTGAGTCCAGTCTGGTGATGCTGGTCTATAAACAAGGGGAATAGACAT
CAATAGGGGTCATGCATTACCCCCCTTGAAGCCAGGAGAACCCGAAACTG
TCCCTATTGAAGCGTGCTGGTTATAGGGAACATTGGTATCTGATTCCAAG
TATGCGGACTGGAAGGTCCACAGTGAGTGGAGAGGGGTCTTCATGTGCTG
GGAGCAAGGACGATGAGTTACCGCTAATGTTTTAGGACGTCTTTTTTTCC
TGTCACCTGTCCCTGTACCCACACCAGTGATATCCTCCACACCCCTATCT
GGCTCCAAACTCCCTGTACTCTTTTATATTGCCTACTACCATACTTATCA
TTCTGTATCAATAACACGTATTTTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_g05.g1 MSMg01no148_g05.g1 CHROMAT_FILE:
MSMg01no148_g05.g1 PHD_FILE: MSMg01no148_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:16 2005
         (280 letters)



>mm_chr7_146923347_146924025
          Length = 679

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacatgaaaggacagttaagaaacagatgccaccggctgcttcaagactgagcattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcacatgaaaggacagttaagaaacagatgccaccggctgcttcaagactgagcattaaa 420

                                                                       
Query: 61  cagaaaccgtgctccaatgcagcgtgtcagcatcaagtgctcatcaagcaaggagcgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 419 cagaaaccgtgctccaatgcagcgtgtcagcatcaagtgctcatcaagcaaggag-gcac 361

                                                                       
Query: 121 tcacacatgtgaggacaggccatcaccatggctgctggactcccagaaggcgagcgagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcacacatgtgaggacaggccatcaccatggctgctggactcccagaaggcgagcgagct 301

                                                                       
Query: 181 gttgtgtggctagcggctctgcttcctgccacactccaaagagcttgccttagctcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gttgtgtggctagcggctctgcttcctgccacactccaaagagcttgccttagctcaaag 241

                                                   
Query: 241 aaaagcctgcttgcacatgttcatctatcaaggaaagtga 280
           ||||||||||  ||| ||||||||||| ||||||||||||
Sbjct: 240 aaaagcctgcaggcagatgttcatctagcaaggaaagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 679
Length adjustment: 9
Effective length of query: 271
Effective length of database: 670
Effective search space:   181570
Effective search space used:   181570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)