BAC Information

Click to search

BAC

Clone NameMSMg01-149B15
Chromosome7 (Build37)
Map Location 68,419,015 - 68,419,649
singlet/doubletsinglet
Overlap geneLOC100041259
Upstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248
Downstream geneEG664943, B230209E15Rik, EG620934, LOC100041293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149B15.T7 (MSMg01no149_b15.b1)MSMg01-149B15.TJ (MSMg01no149_b15.g1)
ACCAG351916AG351917
length693695
length of high quality
(start - end)
647 (47 - 693)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no149_b15.b1 PHD_FILE: MSMg01no149_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:14 2005CHROMAT_FILE: MSMg01no149_b15.g1 PHD_FILE: MSMg01no149_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATTCTCTCCATTAACTCCTCAAGCCATTATTGCATTTTGTGT
CACATATTTATATTTAACTTCCACTTTGATACATGGAAATCCAAAAGAAG
TGCTTGTGGATTTGAAGTTTAATTTTCTTTAGTATAGTTAGTTATTCATC
CTGGGATTTTTGGTGCTAGCTCCCAGGGATGGGATTTTTGGGCTATGCCA
CTTTTATTTTTCCAAGCCACATATGCAAATAAACTAATTTCCTCTGCATT
AGGATTTTTGTTTAATGCCTGGAAGCCAACCAACAAATGTGATAACTCCC
TTTACTGATGAAGACATGTCAAGAGCCTTAGTAGCCAAAAAATAATAGAG
AAATAAACCACTGTTATTGACATTCGAAATTCAAAATCTTCTAAAAGTAT
CAGTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTCTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGATCTTTAGCGACAGGG
TTTCTCTATATAGCCCCGACTGTCCTGGAACCCACTCCGTAGA
NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTACTTTAAGGGTGATGGATG
TAGTCAATAGTACCAGGTAGGGTCCTTTCCAACATGGCTCGAGGTTTCTA
CTCGGTGCCTCCTCACCAAGACTTTGTCTCCCACTTCAAACCGATGTGGA
ACCTGTAAGTCACCAGCTGCATGGGTTTTTTTCAACTGCTCCCAGGTTTC
TTTCCTCATGATTGGGCTGGGCTGGGAGTTGAGATGAGGGAATGGAAGTA
ACATCAGGACAAGTTCTATTTTCTACAGTCACATAGATAGTCAGGGGTGC
CCCAAACATTAGATGGAAAGGTGTTAGACCTAAGCCTCTGGGAGTGTTCC
GGACCTGGAATAGGGCATAAGGGAGAAGGGCTGTCCAATCACTCCTGCTG
GTCTCCAAGGCCAATTTAGTCAAGGTTTCTTTTAGAGTCCTATTGATTCT
TTCTAACTGTCCTGAACTCTGGGGTATGTTGTAAACACAATGTAACTTCC
AATTTATCCCCAGCTGTCTGGCCAGTCCCTGGCTTACCTGGACGACGAAG
GCAGGCCCATTGTCTGATCCAATTACCTTAGGTATCCCGAAACAGGGAAA
GATTTCTTCGAGTAACTTCTTGGTCACCACATTAGCCATTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_b15.b1 MSMg01no149_b15.b1 CHROMAT_FILE:
MSMg01no149_b15.b1 PHD_FILE: MSMg01no149_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:14 2005
         (647 letters)



>mm_chr7_68418811_68419857
          Length = 1047

 Score = 1035 bits (535), Expect = 0.0
 Identities = 613/643 (95%), Gaps = 8/643 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttattctctccattaactcctcaagccattattgcattttgtgtcacatattta 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattcactacattaactcctcaagccattattgcattttgtgtcacatattta 264

                                                                       
Query: 65  tatttaacttccactttgatacatggaaatccaaaagaagtgcttgtggatttgaagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatttaacttccactttgatacatggaaatccaaaagaagtgcttgtggatttgaagttt 324

                                                                       
Query: 125 aattttctttagtatagttagttattcatcctgggatttttggtgctagctcccagggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattttctttagtatagttagttattcatcctgggatttttggtgctagctcccagggat 384

                                                                       
Query: 185 gggatttttgggctatgccacttttatttttccaagccacatatgcaaataaactaattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggatttttgggctatgccacttttatttttccaagccacatatgcaaataaactaattt 444

                                                                       
Query: 245 cctctgcattaggatttttgtttaatgcctggaagccaaccaacaaatgtgataactccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctctgcattaggatttttgtttaatgcctggaagccaaccaacaaatgtgataactccc 504

                                                                       
Query: 305 tttactgatgaagacatgtcaagagccttagtagccaaaaaataatagagaaataaacca 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tttactgatgaagacatgtcaagagccttagtagccaacaaataatagagaaataaacca 564

                                                                       
Query: 365 ctgttattgacattcgaaattcaaaatcttctaaaagtatcagtcttccttccttccttc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 ctgttattgacattcgaaattcaaaatcttctaaaagtatcagtcttccttccttctttc 624

                                                                       
Query: 425 cttccttccttccttccttccttccttccttccttccttccttccttccttccttccttt 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 625 tttccttccttccttccttccttccttccttccttccttccttccttccttccttccttc 684

                                                                       
Query: 485 ctctctttctttctttctttctttctttctttctttctttctttctttctttctttcttt 544
           |||||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| |
Sbjct: 685 ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct 744

                                                                       
Query: 545 ctttctttctttctttctttctttctttctttctttctttcttgatctttagcgacaggg 604
           ||  ||      |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 745 ct--ct------ctttctttctttctttctttctttctttcttggtctttagcgacaggg 796

                                                      
Query: 605 tttctctatatagccccgactgtcctggaacccactccgtaga 647
           ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 797 tttctctatatagccccgactgtcctggaacccactctgtaga 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)