BAC Information

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BAC

Clone NameMSMg01-149E23
Chromosome7 (Build37)
Map Location 131,640,123 - 131,640,713
singlet/doubletsinglet
Overlap genenone
Upstream geneZkscan2, LOC100043482, EG628779
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149E23.T7 (MSMg01no149_e23.b1)MSMg01-149E23.TJ (MSMg01no149_e23.g1)
ACCAG352064AG352065
length702701
length of high quality
(start - end)
545 (73 - 617)582 (66 - 647)
definitionCHROMAT_FILE: MSMg01no149_e23.b1 PHD_FILE: MSMg01no149_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:32 2005CHROMAT_FILE: MSMg01no149_e23.g1 PHD_FILE: MSMg01no149_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCATAATTTGCGGCGCTAAACGACTCCTATAGTCAGAGAATCCGC
GGAATTCCAGAGCAATTGCCCACTGGCTTGGGAATGATTTCTGTCCATAG
CAGAAGAATGGGAATGTAGGGCAGAAGCAGAGGCAGAGAGGCAGAGAGGC
AGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAAAGAGGC
CGAAGAGGCCGAAGAGGCTGAAGAGGCTGAAGTGAGTCCTCTTGACCTGC
ACTCACTGGTCCAGTCATTTCAGCCTAGCTTTTGCAAATCCCCTACCTGG
GTCAGAAGCCTCAGATATGGGTAGCCATCAGGTCCATTTCCTGACAACCT
CTAACTGGGTTAGAAGCTGAGATCCAGGAGCAGAGTCTGTCTCCCGACTT
CACTGAGTGTGGTACTAGGCATTTCTGGTGGCTGCCTTTAGCCAGAGAAC
CAGACCCTGAAGTCTTCATGGCTCCTTCTGACAGGTACTTCTGGCAAAGT
GTGTGTGAAAGCCAAAAGACAGTCAAATTCATCGAGAACCATCTGGTTCC
TGATTGGCTGAGGCTCCACTGCCAGCAAGCCAGGACAGAGATGTTGCAAG
TTAATATCACTTCCCATTGTCATGCGTCCTTTACAGCTCGTCATCTGCTG
ATTTTGGGGGGAAATGGCTGTCCTTGGGCCAGAAGGTAAGCCTCTCGAGA
GA
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGCCCAATTCCTCACTGCTGTTAAGTCATTTCAG
TGGCTTCTGCCACACTCAACCCTCTTCTTCTTTAAGTGTCAATGAGATAG
AACATATGCTTTGTAAACAAATCCAACCCAAAGATGTGGCACAGTGGGTA
GAATTACATGGAAAAACTATGGGAAGCCAGGGCCGACCGAGGTCGATGAA
AGGACAAAGAGAACTCCCCTTCTGTGTCTCTGCCCAGAGGTAAACTTGAC
TAGGTATGATCTGGGGATGATGCCAGGGCCTTGTAGGCCTTAAGGTTTTG
GTTCCTGGGAAACCACCTTTCACTTCTGAAAGGCTGTGGTTATCAGTCCT
AAGGTAGTTGTGTCTGAGTTATGTGTTCTCTTTGCTAATGTTATTTAATT
GAGCTTTCTCATGATCTTGGCCCATTTTTCTCCCTGCAAAGAGTATATGA
AAGCTATACTTCTTAATATACTTGCTTGGCATAAGTTATCAGTGTATGTA
GTACCTCCTAGTCTTAGCTTTCTGCGTTCTTTATTTTCTCATCTCTGGTC
TACCCACCTAGACACTTTGCTATTTGGGATTTTTATCTTGGGGTCAGGTA
AGAAAACCTAACGAGATAAAGCTAGGGACTTTCTACTGAGATAGTTTTGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_e23.g1 MSMg01no149_e23.g1 CHROMAT_FILE:
MSMg01no149_e23.g1 PHD_FILE: MSMg01no149_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:32 2005
         (582 letters)



>mm_chr7_131639745_131640726
          Length = 982

 Score =  996 bits (515), Expect = 0.0
 Identities = 565/591 (95%), Gaps = 15/591 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattcctcactgctgttaagtcatttcagtggcttctgccacactcaaccctcttcttct 66
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 969 aattcctcattgctgttaagtcatttcagtggcctctgccacactcaaccctcttcttct 910

                                                                       
Query: 67  ttaagtgtcaatgagatagaacatatgctttgtaaacaaatccaacccaaagatgtggca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 ttaagtgtcaatgagatagaacatatgctttgtaaacaaatccaacccaaagatgtggca 850

                                                                       
Query: 127 cagtgggtagaattacatggaaaaactatgggaagccagggccgaccgaggt-------- 178
           |||||||||||||||||||||||||||||||||||| |||||||||||||||        
Sbjct: 849 cagtgggtagaattacatggaaaaactatgggaagctagggccgaccgaggtctttttca 790

                                                                       
Query: 179 -------cgatgaaaggacaaagagaactccccttctgtgtctctgcccagaggtaaact 231
                  |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 789 gaggccacgatgaaaggacaaagagaactccccttctgtgtttctgcccagaggtaaact 730

                                                                       
Query: 232 tgactaggtatgatctggggatgatgccagggccttgtaggccttaaggttttggttcct 291
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tggctaggtatgatctggggatgatgccagggccttgtaggccttaaggttttggttcct 670

                                                                       
Query: 292 gggaaaccacctttcacttctgaaaggctgtggttatcagtcctaaggtagttgtgtctg 351
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 669 gggaaaccacctttcacttctgaaaggctgtggttgtcagtcctaaggtagttgtgtctg 610

                                                                       
Query: 352 agttatgtgttctctttgctaatgttatttaattgagctttctcatgatcttggcccatt 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agttatgtgttctctttgctaatgttatttaattgagctttctcatgatcttggcccatt 550

                                                                       
Query: 412 tttctccctgcaaagagtatatgaaagctatacttcttaatatacttgcttggcataagt 471
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttctccctgcaaagagtatataaaagctatacttcttaatatacttgcttggcataagt 490

                                                                       
Query: 472 tatcagtgtatgtagtacctcctagtcttagctttctgcgttctttattttctcatctct 531
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 489 tatcggtgtatgtagtacctcctagtcttagctttctgtgttctttattttctcatctct 430

                                                              
Query: 532 ggtctacccacctagacactttgctatttgggatttttatcttggggtcag 582
           ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 429 ggtctacccaccttgacactttgctatttgggatttttatcttgggttcag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)