BAC Information

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BAC

Clone NameMSMg01-149H23
Chromosome7 (Build37)
Map Location 75,910,973 - 75,911,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665319, LOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149H23.T7 (MSMg01no149_h23.b1)MSMg01-149H23.TJ (MSMg01no149_h23.g1)
ACCAG352199AG352200
length690692
length of high quality
(start - end)
570 (67 - 636)489 (74 - 562)
definitionCHROMAT_FILE: MSMg01no149_h23.b1 PHD_FILE: MSMg01no149_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:47 2005CHROMAT_FILE: MSMg01no149_h23.g1 PHD_FILE: MSMg01no149_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATAATTTGCGGCGCTATACGATCACTATATTCAGAAATGCGCGGAA
TTCTAACTGATGCCACCAAATGGCTGAGAAGCACCTAAAAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATGCC
ACCTCACACCAGTCTGAATGGATAAGATTAAAAACTCAGGTGACAGCAGA
TACTGGAAAGGATGTGGAAAAAGAGGAACACTCCTCCATTGCTGGTAGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAA
AATTGGACATAGTACTACAGGAATATTCCAGCAATTCTTCTCCTGGGCAT
ATACCCAGAAGATTTGTAATAAGAACAAATGCTACATGCTCCACTATGTT
CATAGCAGACTTATTTGTAATAGCCAGAAGCTTGAAATAACCCAGCTGTC
CCTCAAAAGAGGAATGGGTTCAGAAAATGTGGTATATTTACATAATGGAG
TACTATGCACCTATTAAAACCAATGAATTTATGANATTCTTAGACAAATG
GATGAATCTGGAGGATATCATCCTAAGTGAGGTAACCCAATCACAAAAGA
GCACACATGATATGCACTCACTGTTAAGTGGATATTAGCCCAGAAACTCA
GAATCCTTCTTAGAAGGGGGAACAAATACACAGGGAAAGA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGACTCGTAGATAAGAGAGTGTACAA
GCTGATGGAATGTAAAGTTTAGTCTAGACTTGAAGGGTCAGAACAGGGCA
AGGGTCTGAGATGACTCACCCAGAAAATCAACTCCTCACTGACCCTTCAG
GGTCTAGAGCAGAGTCTCTGAGAGAGCATGCAGGCAGACGTGACTCCTAG
TGGGGCCTGAGCATAGAGGCTTGACATAGGACAAGAGTCCAGGGCATCTC
ACTCAGGGAGCATGTTCCTGGGTACAGCTGTAAGCTAGGCATGTCCATTC
AGGGGTGCAAGGCAAGCCCCTGGGTTGATTCATCCTGAGAGTAAATGAAG
GTACACATGCCAGCATTGGTATCTGGTAGAGACTCACCTAGAAAGACTGT
GTAAGTAGATCTATCGTGATTTAAACTTAATTTTTTATACATATATGGAA
CTGTGAATAAAATTGAACACATTCTTACATGGCATGTGAGCTGATATTTT
CATACAGTGTGGTTGATAATGCTGGCCATGTAGAAATCACCTAGTGATAA
GATCTCTGGAAATATCTGTAAGTTTCTAGATGAGGTTAATTGACATGCGA
AAACCCACTCCCAGTGTAGGAAATACCATTACATGGCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_h23.g1 MSMg01no149_h23.g1 CHROMAT_FILE:
MSMg01no149_h23.g1 PHD_FILE: MSMg01no149_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:47 2005
         (489 letters)



>mm_chr7_75910773_75911661
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactcgtagataagagagtgtacaagctgatggaatgtaaagtttagtctagacttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggactcgtagataagagagtgtacaagctgatggaatgtaaagtttagtctagacttga 260

                                                                       
Query: 61  agggtcagaacagggcaagggtctgagatgactcacccagaaaatcaactcctcactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtcagaacagggcaagggtctgagatgactcacccagaaaatcaactcctcactgac 320

                                                                       
Query: 121 ccttcagggtctagagcagagtctctgagagagcatgcaggcagacgtgactcctagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcagggtctagagcagagtctctgagagagcatgcaggcagacgtgactcctagtgg 380

                                                                       
Query: 181 ggcctgagcatagaggcttgacataggacaagagtccagggcatctcactcagggagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctgagcatagaggcttgacataggacaagagtccagggcatctcactcagggagcat 440

                                                                       
Query: 241 gttcctgggtacagctgtaagctaggcatgtccattcaggggtgcaaggcaagcccctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcctgggtacagctgtaagctaggcatgtccattcaggggtgcaaggcaagcccctgg 500

                                                                       
Query: 301 gttgattcatcctgagagtaaatgaaggtacacatgccagcattggtatctggtagagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgattcatcctgagagtaaatgaaggtacacatgccagcattggtatctggtagagac 560

                                                                       
Query: 361 tcacctagaaagactgtgtaagtagatctatcgtgatttaaacttaattttttatacata 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 tcacctagaaagactgtgtaagtagatctatcatgatttaaacttaattttttatacata 620

                                                                       
Query: 421 tatggaactgtgaataaaattgaacacattcttacatggcatgtgagctgatattttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatggaactgtgaataaaattgaacacattcttacatggcatgtgagctgatattttcat 680

                    
Query: 481 acagtgtgg 489
           |||||||||
Sbjct: 681 acagtgtgg 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)