BAC Information

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BAC

Clone NameMSMg01-149L22
Chromosome7 (Build37)
Map Location 20,146,671 - 20,299,396
singlet/doubletdoublet
Overlap geneBC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40
Upstream geneEG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1
Downstream genePvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149L22.T7 (MSMg01no149_l22.b1)MSMg01-149L22.TJ (MSMg01no149_l22.g1)
ACCAG352382AG352383
length720723
length of high quality
(start - end)
424 (66 - 489)293 (68 - 360)
definitionCHROMAT_FILE: MSMg01no149_l22.b1 PHD_FILE: MSMg01no149_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:07 2005CHROMAT_FILE: MSMg01no149_l22.g1 PHD_FILE: MSMg01no149_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,146,671 - 20,147,094)(20,299,107 - 20,299,396)
sequence
TATTTGCGGCGCTAAACGACTCCTATTTTCCGAGGTCGGCGGATTCCTCG
CACTTGCCAAAATGGCCACCTCGTCCTCTGCTTTACTACCTGCTGCCTCT
GACCCTCCTTTCCCAGTCGGAGGGTTTACAAACTTCTGTACAGTCTGGGT
TTATTTCCGTCCTCGTTTCAGCCAAAAGAGCAATGGCCATAGCCGGCTAC
GCTTTGCCTCCTGGTTTACAGACCAGCTGCTTCGCTCTCACCATCCCGTG
GACTCAGGCACTTACCTTTCCCCCAATACTATAACCAGGCTCTCTTCATC
TATCCCTGAGTGTACCATGAACTCAAAGGCTGGCTGCCAGCCTCCCAAAC
TCCCTAACAAGGTTAGGCTTTGAAAACCCAGTCCTGTGGACCTTTCCAGT
TCTCCCGCCAACCCCTCTCTGCCTCCAGCTCTAACCTAGGCACCGTTGAA
ATCACCAATAAGTACCATTTGCCGCGGGCCACCTCCGTGGGGGTCGTCCC
TATGGCGGTCTTACCCGTCTCTAGGTTCTCTCTCGTTACCCTCGTCATAT
CTACCGTGACTCCAGCTGTCTTTGGGTTCCAACGCTCCCTATCCATGTCC
TCGTCAAATGCGAACGTGACATGCCTGCCTATACCCCTTACGCGACCATT
GTTCCCCTATTACTTCTCCGGCCGGATATTCTCCCTCCATTGCCAGTCTC
CTTCGTCACGGTCTCTGCCT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGGTGACTACTTGGGGCCTGGGGGAGTTAGGG
TTTAGGGATCCATAATTCTTACCCTACAAAGTCAAGTAGGAGTGGAAACG
GTGAGTGTGGCGCCCACCCCAGCACCACTTTCTCACTAGAAACCTTTAAT
CTCGTCAGGTCAGGCCTGGTGCTTTGTTGGATCCCTGGGCATTGATGCTG
CTAGTCGTGGCCTGACACCCGGTGTTCACTCCCCATCTCCACATCTCTAG
TTTGCATCCCCCAGCTATCGTCAAGACCCCCACCACCTACTCTTTTCTCC
CAGGTGATCCACACAGCAGCCCTCGGCACAATTGGGGAGTCCAACTACCA
CTTTGGGGTCACATACGTGGGGACGAAGCAGCTGAGCCCCACAGAGGCAA
GATTTCTTCAGTCATTCTAACATCTGTTAAGGAAATCCAGTGGCCAGGCG
ACTTACTCTAGGCGGCTATGAACGTAAGGAGGCGAGCAAGTGACCATCCT
AGGCGCTGGTATATGGCTGATTCCTTCCTGCCGTAATATCCTAAAAATAC
TGTTCTTCATCCCATCCTGCGGATGAGTTGTTTGGAACTTGTGACAACTT
TATTGATGACCTGTATGCTTTGCACCCCACCGTACTTCCGCAATGTTTAA
ACCTTTTCTTGCCTGATCCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_l22.b1 MSMg01no149_l22.b1 CHROMAT_FILE:
MSMg01no149_l22.b1 PHD_FILE: MSMg01no149_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:07 2005
         (424 letters)



>mm_chr7_20146471_20147294
          Length = 824

 Score =  804 bits (416), Expect = 0.0
 Identities = 422/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacctcgtcctctgctttactacctgctgcctctgaccctcctttcccagtcggagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacctcgtcctctgctttactacctgctgcctctgaccctcctttcccagtcggagggt 260

                                                                       
Query: 61  ttacaaacttctgtacagtctgggtttatttccgtcctcgtttcagccaaaagagcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacaaacttctgtacagtctgggtttatttccgtcctcgtttcagccaaaagagcaatg 320

                                                                       
Query: 121 gccatagccggctacgctttgcctcctggtttacagaccagctgcttcgctctcaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatagccggctacgctttgcctcctggtttacagaccagctgcttcgctctcaccatc 380

                                                                       
Query: 181 ccgtggactcaggcacttacctttcccccaatactataaccaggctctcttcatctatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtggactcaggcacttacctttcccccaatactataaccaggctctcttcatctatcc 440

                                                                       
Query: 241 ctgagtgtaccatgaactcaaaggctggctgccagcctcccaaactccctaacaaggtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ctgagtgtaccatgaactcaaaggctggctgccagcctcccaaactcccaaacaaggtta 500

                                                                       
Query: 301 ggctttgaaaacccagtcctgtggacctttccagttctcccgccaacccctctctgcctc 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ggctttgaaaacccagtcctgtggacctttccagctctcccgccaacccctctctgcctc 560

                                                                       
Query: 361 cagctctaacctaggcaccgttgaaatcaccaataagtaccatttgccgcgggccacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctctaacctaggcaccgttgaaatcaccaataagtaccatttgccgcgggccacctc 620

               
Query: 421 cgtg 424
           ||||
Sbjct: 621 cgtg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no149_l22.g1 MSMg01no149_l22.g1 CHROMAT_FILE:
MSMg01no149_l22.g1 PHD_FILE: MSMg01no149_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:07 2005
         (293 letters)



>mm_chr7_20298907_20299599
          Length = 693

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtgactacttggggcctgggggagttagggtttagggatccataattcttaccctac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 490 agggtgactacttggggcctgggggagttagggtttaggaatccataattcttaccctac 431

                                                                       
Query: 61  aaagtcaagtaggagtggaaacggtgagtgtggcgcccaccccagcaccactttctcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaagtcaagtaggagtggaaacggtgagtgtggcgcccaccccagcaccactttctcact 371

                                                                       
Query: 121 agaaacctttaatctcgtcaggtcaggcctggtgctttgttggatccctgggcattgatg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 370 agaaacctttaatctcgtcaggtcaggcctggtgttttgttggatccctgggcattgatg 311

                                                                       
Query: 181 ctgctagtcgtggcctgacacccggtgttcactccccatctccacatctctagtttgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctgctagtcgtggcctgacacccggtgttcactccccatctccacatctctagtttgcat 251

                                                             
Query: 241 cccccagctatcgtcaagacccccaccacctactcttttctcccaggtga 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 250 cccccagctatcgccaagacccccaccacctactcttttctcccaggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)