BAC Information

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BAC

Clone NameMSMg01-150C04
Chromosome7 (Build37)
Map Location 89,207,038 - 89,207,270
singlet/doubletsinglet
Overlap genenone
Upstream geneAlpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150C04.T7 (MSMg01no150_c04.b1)MSMg01-150C04.TJ (MSMg01no150_c04.g1)
ACCAG352658AG352659
length815739
length of high quality
(start - end)
235 (45 - 279)341 (81 - 421)
definitionCHROMAT_FILE: MSMg01no150_c04.b1 PHD_FILE: MSMg01no150_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:37 2005CHROMAT_FILE: MSMg01no150_c04.g1 PHD_FILE: MSMg01no150_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATTTCTAACAAGGCAACGGGAGAACTCCGAGGATCTGTCCTAA
CCCTGAAAGGATGAGCAGTGGGGCTCAGCTTAACAGAGGCAAACTTGTTC
AGGATAGTGGCAGGCGGAGTACCTCTGCCTGGGAAGGAGGCAGGAGACCG
GGGAGCAGAGCTGAAGAAAGAGAGGTCCTGGCATGTGTGTGTATGTGTGT
GTGTGTGTGTGTGTGGTTGTGTGTGTGTGCTCCCCTTTCCCCCTCCCCCC
TCTCCCTCTTTCCCCCTTTTTTTTTTCCCCCTCCCCTCCCCCCCCCCCCC
TCCTCTTTTTCCTTTCTCTCCCCCTTCCCCCCCCTCCGCGCCATCCCTCC
CCCCCCCCCCCTCCCCCCCCCCCCCCCCCCTTTCTTCTTCTCACATCTTC
CCCCCCACCCTCCCCCTCTCCCCCCCTCTTTCTCCCTCTCCTCCTTTTCC
TCCCCCCTCCGCCCTCCTCGCCTCCTCCAACCCTTCGCCTCCCCAACTAT
TTCGTCCGCCTCCTCTCCTCCCCCCCTTCCCCCCCCTTAATCTTCCCGCG
TCTTTGCCGTTCATCCATTTTCCCCCCCCCCCCCCCTTTCCCCCCTCCCT
CTTCCCTTTTTTCATCTGCTGCCCCCCCGCCACCTCCTTTTTTTCTACTT
CCCTTCTCCCCCCCCTCACCCAAACCCTACAAAGCCCGATTTTCCCCCCC
CCCCTATCCCCAGCTCCGTCCTTTCTCCTTTCCGCCCTCCTTTCCCTCCC
TTTTCCCCCTCTTTA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAACACAACCAAACAGG
TGATGGAATTGAATAAAACCATCCAAGACCTAAAAAGGGAAGTAGACACA
ATAAAGAAAGCCCAAAGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAA
GAAATCTGGAACCATAGATACGAGCATCAGCAACAGAATACAAGAGATGG
AAGAGAGAATCTTGGGTGCAGAAGATTCCATAGAGAACATTGGCAACAAC
AATCAAAGAAAATGGAAAATACAAAAAGATCCTAATTTAAAACATCCAGG
AAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGAT
GAGAATGAAGATTTTCAACTCAAAGGCCCAGCAAATATCTTCAACAAAAT
TATAGAAGAAAACTTCCCACACCTAAAGAAAGAGGTGCCCATGACCATAC
AAGAACCCTACCGAACTTCAAATAGACTGCACCAGAAAAGACATTCCTCC
CCACCCCTAACACCCTTACCCCCCCCATGCGCTAAATACAGATAGACTAT
TACCAGCCGTACGGCGAAAACGGCATGTACCCTATACCGGCCCGCCCATC
CCCAATTACCCCCGATTTTTCCCCCGAGACTCCGCCCCGCCCCTAACACC
CTCGCACCGATGCTCACCCCGATCCTCACCCCCACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_c04.b1 MSMg01no150_c04.b1 CHROMAT_FILE:
MSMg01no150_c04.b1 PHD_FILE: MSMg01no150_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:37 2005
         (235 letters)



>mm_chr7_89206834_89207468
          Length = 635

 Score =  385 bits (199), Expect = e-111
 Identities = 224/235 (95%), Gaps = 6/235 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatttctaacaaggcaacgggagaactccgaggatctgtcctaaccctgaaa 64
           ||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 205 gaattctccatttctgacaaggcaacgggagaactccgaggatccgtcctaactctgaaa 264

                                                                       
Query: 65  ggatgagcagtggggctcagcttaacagaggcaaacttgttcaggatagtggcaggcgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 ggatgagcagtggggctcagcttaacagaggcaaacttgttcaggatagtggcaggcaga 324

                                                                       
Query: 125 gtacctctgcctgggaaggaggcaggagaccggggagcagagctgaagaaagagaggtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacctctgcctgggaaggaggcaggagaccggggagcagagctgaagaaagagaggtcc 384

                                                                  
Query: 185 tggcat----gtgtgtgtatgtgtgtgtgtgtgtgtgtgtggttgtgtgtgtgtg 235
           ||||||    |||||||| ||||||||||||||||||||||  ||||||||||||
Sbjct: 385 tggcatcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgtgtgtgtg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)