BAC Information

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BAC

Clone NameMSMg01-150O18
Chromosome7 (Build37)
Map Location 4,471,706 - 4,472,356
singlet/doubletsinglet
Overlap geneTnni3
Upstream geneLOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1
Downstream gene6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150O18.T7 (MSMg01no150_o18.b1)MSMg01-150O18.TJ (MSMg01no150_o18.g1)
ACCAG353230AG353231
length732745
length of high quality
(start - end)		315 (178 - 492)651 (73 - 723)
definitionCHROMAT_FILE: MSMg01no150_o18.b1 PHD_FILE: MSMg01no150_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:36 2005CHROMAT_FILE: MSMg01no150_o18.g1 PHD_FILE: MSMg01no150_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACACCATCCGCGGAAT
TCAGTAGTTGTTCAGTCCCAGAGGCTGGTCTTCAGTGTACCAGAATCCTG
AAGAATTACACTCCAATGACAGTGAAACAATGGACTTGGAAAGACCGTGG
TTGGAAAATTGGCACCTGGAGTTGGGTGTTGCTGTGACAGACCTGACCAT
GTGTTTCAGGGAGGATTGTGAAAGAACCTTGGAACTCTGGGCCTTTGAGT
GTTGAGAGCTTAGTGGGCTGCTCTGTGGAAGCTTAGAAGATAAGAATGTT
GAGAGCACACCAGCCAGCAGCACTCCTTCACGGNCTCTGCATCAGCTCCT
CCCTCCCGGTTCCTGCCCCGTTTGAGTTCCTGTCTTGACTTCCTATGATG
ATGAACATGATATCCACATGTAAGTCAATAAATCCTTTCTTCTCCAACTT
GCTTTGATCATGGTGTTTCATCTGACTAAAATGGTAAGAAGAAGACAAGC
AGAAAAACCACAGTGGGTGCTACATTTTTTGCTTTGTTTGTTTGTTTGGA
AACAGGGCCTCTTGTAGTCTAGGCTGGTCTCTAACTCACTATGTAGTTGA
GGACAACCTTGAGTGCCTTCAGCCTAACATCATCTACTCCTAGAACAGAC
TCCTACTGAGAATGCTCTTAGTCCTCCCACCTGCCCCGCGATTGCCGCCA
CTCCCCCCCCCAATCCGGAAGCAGACCCCGAT

CTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGTTCCCGGCCATATTTCTTTAAGTT
CCCTGGAGTGCAGATTCCGGTGTCAGCTTCCTTTCACCCCCTCCTTCCTC
AGACTCAGGAGTCCAGACCCCAGCACTCCTCTCTCAAACTCAGGGGTCCA
GAGCCTAGGCCTTCTTCCTCAGACCCAGAGGTCTCCTCTCTCAGATCAGG
GAACCCAATCTCCAGCCTCCCTCTCAGCATCCACGCGTTCCTTCACCAGG
ACTTATGCCGACAGCTTCACGCTCGGGTGGACAAAGTGGATGAAGAGAGA
TATGACGTGGAAGCAAAAGTCACCAAGAACATCACTGAGGTGGGGAGCCC
GGGGAAGCCTGGGACCTTCACATTACACCAAGATCTCCAGACTGTAGCTT
CGGGCTGGGGGCTATGGACTCTTGTGCTTGAGATAACTCTAAGCAGAAAG
CAGGCAGTGGCACAGGTACCTCGTGGCAAAGGAAGCTGTCTCTGCAGAGT
AGAGCCTGGGTGGCACAAACGGGTCTGTAGAAACTGAGCATTGAGTTGAG
CTCTGGGACAGGGAATAATGATCTGCACAGAGTGGGCTCAAGTTGTGTTA
GACGCTGTCTTAGTCACGGTTTCTATTCCTGCACAAACATCATGACCAAG
AAGCAAATTGGGGAGGAAAGGGTTTATTCGGCTTATACTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_o18.g1 MSMg01no150_o18.g1 CHROMAT_FILE:
MSMg01no150_o18.g1 PHD_FILE: MSMg01no150_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:36 2005
         (651 letters)



>mm_chr7_4471574_4472624
          Length = 1051

 Score = 1228 bits (635), Expect = 0.0
 Identities = 647/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagttcccggccatatttctttaagttccctggagtgcagattccggtgtcagcttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttagttcccggccatatttctttaagttccctggagtgcagattccggtgtcagcttcct 724

                                                                       
Query: 61  ttcaccccctccttcctcagactcaggagtccagaccccagcactcctctctcaaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 723 ttcaccccctccttcctcagactcaggagtccagaccccagcactcctctctcaaactcg 664

                                                                       
Query: 121 ggggtccagagcctaggccttcttcctcagacccagaggtctcctctctcagatcaggga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 663 ggggtccagagcctaggcctccttcctcagacccagaggtctcctctctcagaccaggga 604

                                                                       
Query: 181 acccaatctccagcctccctctcagcatccacgcgttccttcaccaggacttatgccgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acccaatctccagcctccctctcagcatccacgcgttccttcaccaggacttatgccgac 544

                                                                       
Query: 241 agcttcacgctcgggtggacaaagtggatgaagagagatatgacgtggaagcaaaagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agcttcacgctcgggtggacaaagtggatgaagagagatatgacgtggaagcaaaagtca 484

                                                                       
Query: 301 ccaagaacatcactgaggtggggagcccggggaagcctgggaccttcacattacaccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ccaagaacatcactgaggtggggagcccggggaagcctgggaccttcacattacaccaag 424

                                                                       
Query: 361 atctccagactgtagcttcgggctgggggctatggactcttgtgcttgagataactctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atctccagactgtagcttcgggctgggggctatggactcttgtgcttgagataactctaa 364

                                                                       
Query: 421 gcagaaagcaggcagtggcacaggtacctcgtggcaaaggaagctgtctctgcagagtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcagaaagcaggcagtggcacaggtacctcgtggcaaaggaagctgtctctgcagagtag 304

                                                                       
Query: 481 agcctgggtggcacaaacgggtctgtagaaactgagcattgagttgagctctgggacagg 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agcctgggtggcacaaacgggcctgtagaaactgagcattgagttgagctctgggacagg 244

                                                                       
Query: 541 gaataatgatctgcacagagtgggctcaagttgtgttagacgctgtcttagtcacggttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaataatgatctgcacagagtgggctcaagttgtgttagacgctgtcttagtcacggttt 184

                                                              
Query: 601 ctattcctgcacaaacatcatgaccaagaagcaaattggggaggaaagggt 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ctattcctgcacaaacatcatgaccaagaagcaaattggggaggaaagggt 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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