Query= MSMg01no150_p07.b1 MSMg01no150_p07.b1 CHROMAT_FILE:
MSMg01no150_p07.b1 PHD_FILE: MSMg01no150_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:39 2005
(681 letters)
>mm_chr7_71206933_71208014
Length = 1082
Score = 1201 bits (621), Expect = 0.0
Identities = 667/689 (96%), Gaps = 12/689 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactttttagaccaggctggcgtcaaattcacagaggtccatctgggtctgcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttttagaccaggctggcgtcaaattcacagaggtccatctgggtctgcct 263
Query: 64 tccgagtgctagacttaaagttgttcgtcactatgcccggttcctacatgagttttcatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccgagtgctagacttaaagttgttcgtcactatgcccggttcctacatgagttttcatt 323
Query: 124 tgcctttcacatgtacagcgaagacaccagtggcccaggaacaactgtgacat-ccttag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 tgcctttcacatgtacagcgaagacaccagtggcccaggaacaactgtgacatcccttag 383
Query: 183 acatttctacagcaaaaaggaggtgtaaatttaaattccaaacccagatatgatggacag 242
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 384 acatttctacagcaaaaaggaggtataaatttagattccaaacccagatatgatgggcag 443
Query: 243 aattctaagatgtcttaggattcccatctgtcttagttagggttttactgctgtgaacag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattctaagatgtcttaggattcccatctgtcttagttagggttttactgctgtgaacag 503
Query: 303 acaccatgaccaaggcaactctcataaggacaacaattaattggagtggtttacaggttc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaccatgaccaaggcaactctcataaggacaacaattaattggagtggtttacaggttc 563
Query: 363 agaggttcagcctccattatcaaggcaagaacat-----------ggcaggcatggttca 411
||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct: 564 agaggttcagcctccattatcaaggcaggaacatggcagtgtccaggcaggcatggtgca 623
Query: 412 ggaggagctgagtgttctacatcttcacctgaaggctgctagcagaagactggcttccag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaggagctgagtgttctacatcttcacctgaaggctgctagcagaagactggcttccag 683
Query: 472 gcaggaaggatgaggatcttgaagcccacacacaataacacacctactccaatggggcca 531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 gcaggaaggatgaggatcttgaagcccacacacaataacacacctactccaacggggcca 743
Query: 532 caccttctaatcgtgccactccctgggccgagcttatacaaaccatcgcaccattctcga 591
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 744 cactttctaattgtgccactccctgggccgagcttatacaaaccatcgcacaattctcga 803
Query: 592 gcagcacttctacatactgccctcttcctgagtgtgtagaatgatctgtgtcacaggtgt 651
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcagcacttctacatactgccttcttcctgagtgtgtagaatgatctgtgtcacaggtgt 863
Query: 652 cactttcacgagtgaggcatctggatgtc 680
|||||||||||||||||||||||||||||
Sbjct: 864 cactttcacgagtgaggcatctggatgtc 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_p07.g1 MSMg01no150_p07.g1 CHROMAT_FILE:
MSMg01no150_p07.g1 PHD_FILE: MSMg01no150_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:39 2005
(646 letters)
>mm_chr7_71302450_71303495
Length = 1046
Score = 598 bits (309), Expect = e-175
Identities = 348/361 (96%)
Strand = Plus / Minus
Query: 1 tttctctgagattagaggcaggcagggcactccttgctgcacctgagcttcttcgagaag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 361 tttctctgagattagaggcaggcagggcactccttgctgcacctgggcttcttcgagaag 302
Query: 61 gatgaaaacaattctcaattgtgaaagcaccgctttgatttcaaaatcataagaaaggct 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatgaaaccaattctcaattgtgaaagcaccgctttgatttcaaaatcataagaaaggct 242
Query: 121 gacagacaggtgagccgtgtaaaaaaaggaaggaggctgttttagggtttcattgctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gacagacaggtgagccgtgtaaaaaaaggaaggaggctgttttagggtttcattgctgtg 182
Query: 181 aagggactacatgaccaaggcaagttttaccaagaacatttgactggggccagcttacag 240
|||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||
Sbjct: 181 aagggactacatgaccaacgcaagtcttaccaataatgtttgactggggccagcttacag 122
Query: 241 ttacggaggttcagtccattgtcatcatggtaggaggcatggcagtgttcatgcagacat 300
|||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 121 ttacggaggttcagtccattatcatcacggtaggaggcatggcagcgttcaggcagacat 62
Query: 301 agtgctggaggagccaaaagatctccatcttgatttgaaggcagccaggaagagactcga 360
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 61 agtgctggaggagccaaaagatcttcatctcgatttgaaggcagccaggaagagactcga 2
Query: 361 a 361
|
Sbjct: 1 a 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
