BAC Information

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BAC

Clone NameMSMg01-152A03
Chromosome7 (Build37)
Map Location 114,030,775 - 114,031,236
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706
Downstream geneOlfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152A03.T7 (MSMg01no152_a03.b1)MSMg01-152A03.TJ (MSMg01no152_a03.g1)
ACCAG354014AG354015
length765727
length of high quality
(start - end)
96 (136 - 231)462 (74 - 535)
definitionCHROMAT_FILE: MSMg01no152_a03.b1 PHD_FILE: MSMg01no152_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:59 2005CHROMAT_FILE: MSMg01no152_a03.g1 PHD_FILE: MSMg01no152_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCCAGTATTATAAATTGCCCTAGATTTCTTTGTCTGGTAATATCTTT
GTATATCTTTAATTTCTAAAGAATAGCTTTGTTGGTTATATTAATTTTGA
TTAGAAGATTTTCTTTCAACTCTAAGTTTATCTTTCATCCCTCCTCATTT
GTGATGTCTTTGCTGAGAATTCTAGGTCAGGCAAGCAATGACATTCTTGT
GTAGTTTTTCTTTCTATTTGGAAATATATTTTGTTGTCCTTAACTTTCTG
AGAATATGATTGTCTTGGCGTGGACTTGGTTTGGTTGACTATAACTGGCG
TTCTTTGACCTTTCACTGCCTAGACTTTTGTGTCTTTTATGCTTCGCGAA
ATTTTATGTTATTATCTCTTTGAGAAACTTTCTATAGACTTGTTTTTTTC
ATTTATGTTTCTAATTGCATTTGCATCACGCATTTTAACATCCATGTTTT
CTGATTGATTGACTTTTACCAGTTACTTAAATATTTTTGTTAACTTTCCC
TTCGGACCATACCTAAATTCGTTCCGCTCTCGATGCATGAAGGTCATTAA
GATTTCCTTCCCACACTCCGCCTTGAAATCGCACCGTTCATCAACCTTCC
ACCCACGCCCCCCTTGCCACCAACGCTCTTACTCTTCAAGCCCCTCTACA
CTTGCCCTTTCCCGAATCCTCCCCCGGTCCTGGACAACATTCCCTATATG
TTCACCACTAACGGC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAGGTACTTTGTGTGGTCTGGAATAT
GTCTTTTGCTTTTGGAGGTAAGGAAGGGTTTTGTTTTTTATTTGGGCTTT
GAGTACTGAGGTATTGATTGAAGATCTCAGTTGTCTGTCAATTGTGAAAT
TCTCTAATTTCTGACTCTCTGCTCTCTGTTCTCTAGACACCTTGTCTGAA
CACCAGCCTGTACAAGTTGAGACAATAACAGTCATTGTGAAACACTGCTT
AGATCTGAGTTAATAGGATTCTAAGCCCCAGGTAATGAGTCTCAGTATTT
CCCTTCAGTACATCTGGATTTTCCTGGACTCCTAGAGTCTAATGAAAGTG
CTTAAATTAGTAGTACCTCAAAACAAAGTTACTTAATATCAGTTGAAGTT
TCTTCTTTTATCTATGTGACTTCTTGCCTTTGAAGGACTACAGAAAAGCC
ATTAGAAATAAATTTTAAAATTTAAATATACTGAGTAGTGACATGGAATA
ATATTTATGAAAACATGCTTCCAAATTTCATTCTTTTCTCCTCTGGATCT
TCTGACCACTTCTGTAAAGGTTAGCAATGCTCCTCCATTCCTCAGCCTTG
CTGACAGTTCTTGATGTGAGATCCCCAATACAATCATCCTTTTTCCTAGA
AACGAGTTTTTCTTCAGCTGGCCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_a03.g1 MSMg01no152_a03.g1 CHROMAT_FILE:
MSMg01no152_a03.g1 PHD_FILE: MSMg01no152_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:59 2005
         (462 letters)



>mm_chr7_114030605_114031466
          Length = 862

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggtactttgtgtggtctggaatatgtcttttgcttttggaggtaaggaagggttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taaggtactttgtgtggtctggaatatgtcttttgcttttggaggtaaggaagggttttg 573

                                                                       
Query: 61  ttttttatttgggctttgagtactgaggtattgattgaagatctcagttgtctgtcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttttttatttgggctttgagtactgaggtattgattgaagatctcagttgtctgtcaatt 513

                                                                       
Query: 121 gtgaaattctctaatttctgactctctgctctctgttctctagacaccttgtctgaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtgaaattctctaatttctgactctctgctctctgttctctagacaccttgtctgaacac 453

                                                                       
Query: 181 cagcctgtacaagttgagacaataacagtcattgtgaaacactgcttagatctgagttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 452 cagcctgtacaagttgagacaataacagtcattgtgaaacactgcttagatctgagttac 393

                                                                       
Query: 241 taggattctaagccccaggtaatgagtctcagtatttcccttcagtacatctggattttc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 392 taggattctaagccccaggtaatgagtctcagtatttcccttcattacatctggattttc 333

                                                                       
Query: 301 ctggactcctagagtctaatgaaagtgcttaaattagtagtacctcaaaacaaagttact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctggactcctagagtctaatgaaagtgcttaaattagtagtacctcaaaacaaagttact 273

                                                                       
Query: 361 taatatcagttgaagtttcttcttttatctatgtgacttcttgcctttgaaggactacag 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 272 taatatcagttgaagtttcttcttttatctatgtgactttttgcctttgaaggactacag 213

                                                     
Query: 421 aaaagccattagaaataaattttaaaatttaaatatactgag 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaaagccattagaaataaattttaaaatttaaatatactgag 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)