BAC Information

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BAC

Clone NameMSMg01-152J16
Chromosome7 (Build37)
Map Location 115,362,706 - 115,363,395
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1
Downstream geneOlfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152J16.T7 (MSMg01no152_j16.b1)MSMg01-152J16.TJ (MSMg01no152_j16.g1)
ACCAG354433AG354434
length741738
length of high quality
(start - end)		693 (47 - 739)662 (77 - 738)
definitionCHROMAT_FILE: MSMg01no152_j16.b1 PHD_FILE: MSMg01no152_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:44 2005CHROMAT_FILE: MSMg01no152_j16.g1 PHD_FILE: MSMg01no152_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTAACGTGAACAGAGAATAACCCATGAGGTCTCAATTCTATAT
AAACAAGCATAGTCACCTAGAAGAAACTGAGAGTGGAAGAAATGGTCTTC
CCCAAGGGAAAGTACAATTTTAGTCTAATTTCAAATTTTCTGCCCTAAAA
ACCTGCATACAAGGAAAATTGTATAGATTGAGCAGGCAGTTCTAAAATTG
AGCAAATAAAAAACATAGTAATGAAAATGAGGCAACTAATTGGAAATAGA
GCAAGAAATGTTTACATGGAAAGAATTGCAAGAAGAAAAGGGGATAAGAA
ATTACTCAATTGTATTATAATATCAAAATAAAAGAAATGATTTTATAAGC
ACAGGTGATAGAGCTAAAACAAATGAGCCAATCAGAACACAGAGCATGAA
GGAATTTCTTTAACAGATAAGTGAGGCAGCCCTGATGAAAAGAACTGATG
GTTCCATACGCAAGACAAGACTGTGGTCCTCACAAATCTCAAATCTACCT
GCTCATTTCCACATACTGTTTTCTCTGACAGATGGATTGTCAGTAGAGAT
AGATCTCATCTGTCATTCTATATGTCTCAGAAAAACAATGGTCAGGCACC
ACATTGATATATAGGGCCCTGAGAGCATGGTACACCCACAAGTAGGAGAT
TGCTAAATTAATCTTCCATGGTTCCACAGTGATCAACAACN

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGTAATACTGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGA
TCAAAAATTCAGGTGTTAGCAGATGCTGGGAGTATGTGAAGAAAGAGGAA
CACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCATGCTGGAAG
TCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATCC
AGCAATACCTCTCTTGGGCATATTCCCAGAAGATGTTCCAACTGGTAATA
AGGACACAAGCTCCTCTGTGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGTCTCTCAAAAAAGGGATGGATACAGAAAAT
GTGGTACATACGTACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGATATTGAGGGTATCATCCTGAGT
GAGGTAACCCAATCACAAAAGAAATTACTAGATATACACTCACTGATAAG
AGGATATTATCCCAGAAATTTAGAATACCCAAGATTCAATTTGCAAAACA
CAAGATAATCAAGAAGAAGAAAGAACAACGTGTTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_j16.b1 MSMg01no152_j16.b1 CHROMAT_FILE:
MSMg01no152_j16.b1 PHD_FILE: MSMg01no152_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:44 2005
         (693 letters)



>mm_chr7_115362316_115363408
          Length = 1093

 Score = 1154 bits (597), Expect = 0.0
 Identities = 668/693 (96%), Gaps = 6/693 (0%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattcactaacgtgaacagagaataacccatgaggtctcaattctatataaacaagca 63
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1080 ggaattcactaaagtgaatagagaataacccatgaggtctcaattctatataaacaaaca 1021

                                                                        
Query: 64   tagtcacctagaagaaactgagagtggaagaaatggtcttccccaagggaaagtacaatt 123
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1020 tagtcacctagaagaaactgagagtggaagaaatggtcttccacaagggaaagtacaatt 961

                                                                        
Query: 124  ttagtctaatttcaaattttctgccctaaaaacctgcatacaaggaaaattgtatagatt 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  ttagtctaatttcaaattttctgccctaaaaacctgcatacaaggaaaattgtatagatt 901

                                                                        
Query: 184  gagcaggcagttctaaaattgagcaaataaaaaacatagtaatgaaaatgaggcaactaa 243
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 900  gagcaggcagttttaaaattgagcaaataaaaaacatagtaatgaaaatgaggcaactca 841

                                                                        
Query: 244  ttggaaatagagcaagaaatgtttacatggaaagaattgcaagaagaaaaggggataaga 303
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 840  ttggaaatagagcaagaaatgtttacatggaaagaattgcaggaagaaaagggcataaga 781

                                                                        
Query: 304  aattactcaattgtattataatatcaaaataaaagaaatgattttataagcacaggtgat 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  aattactcaattgtattataatatcaaaataaaagaaatgattttataagcacaggtgat 721

                                                                        
Query: 364  agagctaaaacaaatgagccaatcagaacacagagcat--gaaggaatttctttaacaga 421
            |||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||
Sbjct: 720  agagctaaaacaaatgagccaatcagaacacagag--tgggaaggaatttctttaacaga 663

                                                                        
Query: 422  taagtgaggcagccctgatgaaaagaactgatggttccatacgcaagacaagactgtggt 481
            ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||  ||||
Sbjct: 662  taagtgaggcagccctggtgaaaagaactgatggttccataagcaagataagaccatggt 603

                                                                        
Query: 482  cctcacaaatctcaaatctacctgctcatttccacatactgttttctctgacagatggat 541
            |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 602  cctcacaaatctcaaatctacctgctcatttccaaatactgttttctctgacaaatggat 543

                                                                        
Query: 542  tgtcagtagagatagatctcatctgtcattctatat-gtctcagaaaaacaatggtcagg 600
            |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 542  tgtcagtagagatagatctcatctgtcattatatatggt-tcagaaaaacaatggtcagg 484

                                                                        
Query: 601  caccacattgatatatagggccctgagagcatggtacacccacaagtaggagattgctaa 660
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 483  caccacattgatatatagggccctgagagcatggtacaaccacaagtaggagattgctaa 424

                                             
Query: 661  attaatcttccatggttccacagtgatcaacaa 693
            ||||| |||||||||||||||||||||| ||||
Sbjct: 423  attaaccttccatggttccacagtgatcgacaa 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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