BAC Information

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BAC

Clone NameMSMg01-153A01
Chromosome7 (Build37)
Map Location 36,708,092 - 36,871,820
singlet/doubletdoublet
Overlap genenone
Upstream genePepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
Downstream geneLOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153A01.T7 (MSMg01no153_a01.b1)MSMg01-153A01.TJ (MSMg01no153_a01.g1)
ACCAG354723AG354724
length689675
length of high quality
(start - end)
364 (50 - 413)404 (75 - 478)
definitionCHROMAT_FILE: MSMg01no153_a01.b1 PHD_FILE: MSMg01no153_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:16 2005CHROMAT_FILE: MSMg01no153_a01.g1 PHD_FILE: MSMg01no153_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,708,092 - 36,708,454)(36,871,417 - 36,871,820)
sequence
CATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGC
GGAATTCTTGCTCTTGCCCCGTTTGCTCACAAAATGGTTTCGCGTTTAGG
AGCCCACATTGAGAGGCGCGTCAATCATCAGAGCTCAGACTTAGGCGCTG
ACTCGGCAGGTAAACAGAACGGCAGCGCACACTTTAATTTGGGCAAATAC
CTTTTTCAATCAAGTGACCGGCAGCAGCAGGGGCGGGGGCAGGGGACTGC
ACACCCTTCACCTGCTTAAGCTGTATGTGGAAGGGGATCCTTGGGCACCA
CAGAGGACCCCGAGACTGGGTCACTGCGAGTCAGTGCCCGGTATCCCTGC
AGCGGGTGCAGCTTTCCTTGCATGCTAGGACAGTCTTTGAATTGGAGGTG
GCAGACAGATGGGCGCTGCGTTTCTCTTCATACAACGGGAGGTGTGCTCT
TCGATTCGATCAGCACATTAGCCAAACCTGAGATGGATGCTCAGCATATC
GGAAAAATCTCACTGACCCCGACTCCGTGTATCTGGCATCTGTTAGAAAA
CTCTACAAATCACCATGACTCTGTGGCTGTGTAGCATGGTTCGAGCTCTG
TCACTTGTCTCTTCCACATTGCCATGTAACCTGTCTCTAACCATATCACT
CAGCTATCTCTTTTCATGTGTGCGCGCGCGCGATGTGTC
CCCATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCAGAAATTCTTTCCCAGATGCCTGGATGTTGGG
GCCTTGGACAGCCTGAGTCCCATTTCTTGGTTCTGGCTAGTGTTACTGCC
TTCTGAAGACACTTCACCAATGACATGACTCTTGGAAACAGCTGATCGCA
CCCCTACCATCGGTTCTGAGGCCTTTATGATAAACCAGTTCCAAATAGCA
TGATGCTCCAGGCTTGCCTGCACACCTGTCCCCTATGGAAATCAATAAAT
ATCCCATCGTTAGTCTGACCAGACCTCACCACTTAAGAAAGCTGCTGCCC
ACTGCCAATCAAGTTAGGACCTTTAACATCTAAAATCATTTCTACAGAGC
AGAGATGGGTATTTGCCCCTTCCTTGATTTCTTTCCATCACGTTTGATTC
TCCCCACACCACACAATAGGGAGGGTGGCTAACATGGTATTTGAAATACA
CAACAAATCCTACCAATGTCTAGTGTCAGCACTCCCATCTTTGAACATTG
CGTGGCAGTCACAGTCAAGCCTCCAGCTAGTTGGATAGAGCCCTTGACAG
TCCAGTTTCTGAACACCTGTTCACTACATCATTCCCTCTGGGATGCACCT
TCTTTAGGAGACATTGTCTCCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_a01.b1 MSMg01no153_a01.b1 CHROMAT_FILE:
MSMg01no153_a01.b1 PHD_FILE: MSMg01no153_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:16 2005
         (364 letters)



>mm_chr7_36707891_36708654
          Length = 764

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcttgctcttgccccgtttgctcacaaaatggtttcgcgtttaggagcccacatt 61
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttgctcttgccgtgtttgctcacaaaatggtttcgcgtttaggagcccacatt 261

                                                                       
Query: 62  gagaggcgcgtcaatcatcagagctcagacttaggcgctgactcggcaggtaaacagaac 121
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 262 aagaggcgcgtcaatcatcagagctcagacttaggcgctgactcggcagggaaacagaac 321

                                                                       
Query: 122 ggcagcgcacactttaatttgggcaaatacctttttcaatcaagtgaccggcagcagcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggcagcgcacactttaatttgggcaaatacctttttcaatcaagtgaccggcagcagcag 381

                                                                       
Query: 182 gggcgggggcaggggactgcacacccttcacctgcttaagctgtatgtggaaggggatcc 241
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggccgggggcaggggactgcacacccttcacctgcttaagctgtatgtggaaggggatcc 441

                                                                       
Query: 242 ttgggcaccacagaggaccccgagactgggtcactgcgagtcagtgcccggtatccctgc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgggcaccacagaggaccccgagactgggtcactgcgagtcagtgcccggtatccctgc 501

                                                                       
Query: 302 agcgggtgcagctttccttgcatgctaggacagtctttgaattggaggtggcagacagat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agcgggtgcagctttccttgcatgctaggacagtctttgaattggaggtggcagacagat 561

              
Query: 362 ggg 364
           |||
Sbjct: 562 ggg 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_a01.g1 MSMg01no153_a01.g1 CHROMAT_FILE:
MSMg01no153_a01.g1 PHD_FILE: MSMg01no153_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:16 2005
         (404 letters)



>mm_chr7_36871217_36872020
          Length = 804

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttcccagatgcctggatgttggggccttggacagcctgagtcccatttcttggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tctttcccagatgcctggatgttggggccttggacagcctgagtcccatttcttggttct 545

                                                                       
Query: 61  ggctagtgttactgccttctgaagacacttcaccaatgacatgactcttggaaacagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggctagtgttactgccttctgaagacacttcaccaatgacatgactcttggaaacagctg 485

                                                                       
Query: 121 atcgcacccctaccatcggttctgaggcctttatgataaaccagttccaaatagcatgat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atcgaacccctaccatcggttctgaggcctttatgataaaccagttccaaatagcatgat 425

                                                                       
Query: 181 gctccaggcttgcctgcacacctgtcccctatggaaatcaataaatatcccatcgttagt 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 gctccaggcttgcctgcacacctgtcccctatggacatcaataaatatcccatcgttagt 365

                                                                       
Query: 241 ctgaccagacctcaccacttaagaaagctgctgcccactgccaatcaagttaggaccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgaccagacctcaccacttaagaaagctgctgcccactgccaatcaagttaggaccttt 305

                                                                       
Query: 301 aacatctaaaatcatttctacagagcagagatgggtatttgccccttccttgatttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aacatctaaaatcatttctacagagcagagatgggtatttgccccttccttgatttcttt 245

                                                       
Query: 361 ccatcacgtttgattctccccacaccacacaatagggagggtgg 404
           |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 244 ccatcacgtttgattctccccacaccacacaatagggatggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)